Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3845 ATGAGGCACTCTAAGGAAGATCCATCAAGTAGCGATGCACAGGTGGTTGACCTGATATCAGCAGTGAAGGAGTTACATGGCCTTAGTTCTCAGGAACTTAGTAGATTATTGAGGGACTCTGAAAATTTTACTATTCACCACCTAACCAGAAAAGGATCTTTGAGCAAGATTGATATGGAAAAGCTTGCTGGATCTCTCCCATTGCATCTTATTGCAGTGCTAATCTCATCTGATAGGGATGAATCAATGATGAGATATGTGTTATGTGGCATACGCCTCTTGCATTCATTGTGTGATTTATCTCCTCGTCACTCTAAACTTGAACAGATTTTTCTAGATGATGTGAAAGTGTTGGAACAGTTGATTGACTTGGTTTTCTATGTGATAATAGTTCTTGGTGGTTATAGACAGGAAGGCCATACTTCTACTCGTAAGCTCCTTTTGCATTCAGCTCTTGTGACATGCAGCTTACATCTATTAAATGGGATTATATCAACACAATGGCAAGATGTTGTTCATGTATTGCTCGCGCATCCTAAGGTAAATATATTTATGGATGTGGCTTTTGGATCGGTTCGCATGGTTGTTAGGTTTCTTGAGATTACCCTGTCAGGTTACCATGAAAGTGACTTCGTGGAACCAAATCTAACAGCTGAACGAGTAGTTTATTTTCTCACCCAGCAGTGTGAGGCTTCTTTGCAGTTTCTTCAGTCATTGTGCCAGCAGAAATTGTTCAAGGAGCGCCTACTCAAGAATAAGGAACTATGTGGAAAGGGCAGTATTCTTTTTCTGATTAGGTCCATTCTGAAGCTTGACATTCAACCATATTTTCCAACCAAGATTATGGCTGCTTTGTCCCGGCTAAAATCTAAGATACTATCCCTTCTGCTGAGTTTGTGCGAAGCAGAAAATGCTTCTTATCTTGATGAAGTTGCCAGCTCATCACAAAGTTTAGATTTGGCCAAGTCTGTTGCTTTAGAGGTTTTTGATGTGTTGAAGACTGCTTTTGGAAATAGTCCCCAGAATCTCAAAAATGGAAAAAAATATCCAATGGGGTTTTTACAGCTCAATGCAATGCGTCTAGCTGACATATTCTCTGATGATTCAAACTTTCGATCTTACATGACAAATTGTTTTACTAAAGTTCTGGCAGCAATATTTATGCTATACCATGGAGATTTTTTGTCCTGTTGGTGCTCGTCTAGCCTCCCAGAGAAGGAGGAGGATGCAACTCTTGAATATGATATATTTGCTGCAGTTGGATGGATCTTGGATAATACTTCATCGCAGGATCTATCAAATACGGCAAATTTGGAGTTTAACCTTGCCCGTAACAGCATGCCTCAGGCTTCTTATGCACATCATAGGACTTCATTATTTGTTAAAATCATAGCAAATCTTCATTGTTTTGTTCCCAACATATGCGAAGAGCAGGAGAGGAACCTTTTCGTTCTTAAGGTTTTGGAGTTCTTGCAAATGGATTTACGTAACTTGTTGCCTGGCTTTGCTTTTGCTTCTGATGCTCCTAATGCAGCCAGCATCTGCAAGAACCTACGCTCATTGTTAAGTCATGCAGAATCCTTGATTCCAAACTTTTTAAATGTGGAGGATGTGCATCTTTTAAGGGTGTTTTCTGACAAATTAGAGTCATTAATTTCTTCTTCTGACTTTAGAGCAAATCGTGTCCAGGATAACAAGGACTTATCTTGCGACAAGTTTTCCAAACTTAGCATCAATGATCATCAGGAGGCTCAGAGTCCAGGTGGATGCTCATCACCTATACCTGTAAAAGGACTACTTGCTGATCTTACGAAGAAGAGTGGCAATTTAAGGGAAGGAATGTCTGAGAATTCTGCATTCTTAGACATAAACCATTTTGATGCCAGAGCTGAAGACATTAATCAAGGTGCTGATCCAAATCCACTAGATACGATGGAAGATAAAATTATTTCTGGTAAGACTGCATCAGAAGGTGCAAGAGATGCAGACAAGGATGCCCAAAATGTTGAAACAAGTGGTTCTGATACCAGTTCTGCAAAATGTAAGAGTGTTATTGATCAGATGGACAATGTTGAGCTTTCAAAATCAGCCAAGCGTGTTATAGAGGTTGGAGAAAATCCTGAAGATGAGAAGGTTGAAACAAAACAAAGGAAAAAGCGAAAGCGAACTATAATGAATGATCACCAGGTGATGTTAATTGAGAGGGCACTGTTGGATGAGCCTGAGATGCAGCGAAATGCGGCCTTACTACTGTCATGGGCTGAAAAATTAAGTCATCATGGTTCCGAAGTTACACCTTCACAGCTTAAGAATTGGCTGAACAATCGAAAAGCTAGGCTAGCCCGAACAGCTAGGGATGTTCGAGCAGCAGCAGATGTTGACACTTCTGTTCCGAACAAGCAAAAGGGGCCGGTACAGGGTTCCTATGACTCCCCTGATAGCCCGAGTGATGCATCGAATGCAAGGAAAGAACTTCCAAGTCATTCTAATATTATTTCTGGCCATAAGGCTGATAGTTTGATGGCTGAGTTTGTTGATCTTGAGCCTCCAGAAGCTGGGTGCAAGACAGGTCAGTGTGTTGTGCTTGTAGATAAGCGAGGAGAGGAAATTGGCAAAGGGAAGGTATTTCAGGTTAGTGGTAAGTGGTGTGGGAAGAGTTTGGAGGAATTGGAGACTTGTGTTGTGGATGTTTATGAGCTCAAAGCTGATAAAGCTTCGCGACTACCTTACCCATCTGAAGCCAACGGCTCCTCATTTTCAGAGGCTGAAACCAAGTTTGGTGTCATGAAAGTGTTATGGGATTCAAACAGAATTTTCGTATTGAGTGCATTGGATACCCAATTGGATGGCTCATCAGTACAAAGACTCAAATGGAAAGAATTAAAACAAAAGCCGGCCACTACCTCTGCTACTCAAGTGCAGTCTCTTTTTCGATTATCCATGGCGCCGAAAGGTGATAGCTCAAAGAAGACTGACCCAAAGGCACAGGCCTTGAAAACTGCCAAGGCAGTGAAATCAGGCCCCACTTTCAAGAAGAAGGCTAAGAAGTTTAGAACATCGGTCACATTCCATCGACCCAAGACATTGAAAAAGGATAGAAATCCCAAGTACCCTCGCATTAGTGCTACTCCGAGAAATAAGCTTGATCATTATCAAATTCTGAAGTATCCTCTCACCACCGAGTCAGCAATGAAAAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCAGACAAAAAGAAGATAAAGGATGCAGTGAAGAAAATGTATGACATTCAAGCCAAGAAAGTAAACACTTTGATCAGGCCCGATGGTACCAAGAAGGCCTATGTTAGGTTGACTCCCGATTATGATGCCTTGGATGTCGCGAACAAGATTGGAATCATCTAA 3402 0.4127 MRHSKEDPSSSDAQVVDLISAVKELHGLSSQELSRLLRDSENFTIHHLTRKGSLSKIDMEKLAGSLPLHLIAVLISSDRDESMMRYVLCGIRLLHSLCDLSPRHSKLEQIFLDDVKVLEQLIDLVFYVIIVLGGYRQEGHTSTRKLLLHSALVTCSLHLLNGIISTQWQDVVHVLLAHPKVNIFMDVAFGSVRMVVRFLEITLSGYHESDFVEPNLTAERVVYFLTQQCEASLQFLQSLCQQKLFKERLLKNKELCGKGSILFLIRSILKLDIQPYFPTKIMAALSRLKSKILSLLLSLCEAENASYLDEVASSSQSLDLAKSVALEVFDVLKTAFGNSPQNLKNGKKYPMGFLQLNAMRLADIFSDDSNFRSYMTNCFTKVLAAIFMLYHGDFLSCWCSSSLPEKEEDATLEYDIFAAVGWILDNTSSQDLSNTANLEFNLARNSMPQASYAHHRTSLFVKIIANLHCFVPNICEEQERNLFVLKVLEFLQMDLRNLLPGFAFASDAPNAASICKNLRSLLSHAESLIPNFLNVEDVHLLRVFSDKLESLISSSDFRANRVQDNKDLSCDKFSKLSINDHQEAQSPGGCSSPIPVKGLLADLTKKSGNLREGMSENSAFLDINHFDARAEDINQGADPNPLDTMEDKIISGKTASEGARDADKDAQNVETSGSDTSSAKCKSVIDQMDNVELSKSAKRVIEVGENPEDEKVETKQRKKRKRTIMNDHQVMLIERALLDEPEMQRNAALLLSWAEKLSHHGSEVTPSQLKNWLNNRKARLARTARDVRAAADVDTSVPNKQKGPVQGSYDSPDSPSDASNARKELPSHSNIISGHKADSLMAEFVDLEPPEAGCKTGQCVVLVDKRGEEIGKGKVFQVSGKWCGKSLEELETCVVDVYELKADKASRLPYPSEANGSSFSEAETKFGVMKVLWDSNRIFVLSALDTQLDGSSVQRLKWKELKQKPATTSATQVQSLFRLSMAPKGDSSKKTDPKAQALKTAKAVKSGPTFKKKAKKFRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3845 1133 MobiDBLite consensus disorder prediction 784 824 - -
Acco01g3845 1133 Pfam Ribosomal protein L23, N-terminal domain 994 1042 IPR005633 -
Acco01g3845 1133 PANTHER NODULIN HOMEOBOX 1 942 IPR039325 GO:0003697|GO:0009908
Acco01g3845 1133 MobiDBLite consensus disorder prediction 799 824 - -
Acco01g3845 1133 MobiDBLite consensus disorder prediction 653 668 - -
Acco01g3845 1133 ProSiteProfiles 'Homeobox' domain profile. 716 783 IPR001356 GO:0003677
Acco01g3845 1133 Gene3D - 1014 1133 IPR012677 -
Acco01g3845 1133 FunFam 60S ribosomal protein L23a 1013 1133 - -
Acco01g3845 1133 ProSitePatterns Ribosomal protein L23 signature. 1111 1126 IPR001014 GO:0019843
Acco01g3845 1133 Pfam Ribosomal protein L23 1053 1114 IPR013025 GO:0003735|GO:0005840|GO:0006412
Acco01g3845 1133 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1050 1126 IPR012678 GO:0003735|GO:0005840|GO:0006412
Acco01g3845 1133 SMART HOX_1 718 787 IPR001356 GO:0003677
Acco01g3845 1133 MobiDBLite consensus disorder prediction 652 680 - -
Acco01g3845 1133 CDD homeodomain 719 783 IPR001356 GO:0003677
Acco01g3845 1133 Hamap 50S ribosomal protein L23 [rplW]. 1053 1133 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3845 Acco-ChrAcco01 54191480 54203923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3845 981 1133 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.013 1.88e-61 204