Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3830 ATGCGAAGTTGGGGCAAATGGGTCTCTGAAATTCGAGAGCCTCGCAAGAAATCACGAATCTGGCTCGACACTTTCGCCTCTCCAGAAATGGCGGCTCGAGCCCACGACGTCGCCGCCCTGAGCATCAAGGATGAATCCGCTGTCCTCAACCTCCCCCCCTTATCATCTCTGCTTCCTAGACCCGATACACTCGAACCACGTGACATCCAAGCCGCCGCCGCTGGAGCAGCCGCCATGGTGAAATTCGACCCCGCTCAGCCTTCGTCTTCGCTACCACCGGAAGAAGCAGAATCTTCGGAGTTGAGTGAGATAGTGGAATTGCCCAACATTGAATTCGATTCAGTGGAGTCGTCGTCCTCGAGCCGCGACTTTGTCGCTTCAGCTTTTATCTGCAGACTTACCATTTTGAAGTCTGGCAAAACAGCAAGATGTCAAGTGGACCAACACATTGGTGTTATGAGTGTCGACTTCCAGTTGCACTTGAAGGCGGAGAGGGCGCTGAGAGCTTCTGAACCAAGCTTTGGGCTCATAGGTGCTTTTGACAATTTCTTGAGGCAGAGAATAGCTGGGCAAGACTCCAACATTGGTGCTAGACAAAGGTCTATCAACGCCCAATTTCCTGAATGGAGTCAAGATTTTTTCTTGTGGCAAGAGCCCTAA 660 0.5167 MRSWGKWVSEIREPRKKSRIWLDTFASPEMAARAHDVAALSIKDESAVLNLPPLSSLLPRPDTLEPRDIQAAAAGAAAMVKFDPAQPSSSLPPEEAESSELSEIVELPNIEFDSVESSSSSRDFVASAFICRLTILKSGKTARCQVDQHIGVMSVDFQLHLKAERALRASEPSFGLIGAFDNFLRQRIAGQDSNIGARQRSINAQFPEWSQDFFLWQEP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3830 219 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Acco01g3830 219 Pfam AP2 domain 2 42 IPR001471 GO:0003700|GO:0006355
Acco01g3830 219 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Acco01g3830 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 117 - -
Acco01g3830 219 SUPERFAMILY DNA-binding domain 2 52 IPR016177 GO:0003677
Acco01g3830 219 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Acco01g3830 219 CDD AP2 1 50 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3830 Acco-ChrAcco01 54061180 54062801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3830 1 125 AP2-EREBP Transcription Factor Family AT5G11590 50.694 1.36e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g3830 AP2 1.4e-08 CL0081