Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3827 ATGTTCGATCTTAATCTGAATGCCGATGCGACTGATACCGCTTATAACCATGAATCCATCAAGTTCTCCGACGAGCTAACGGAAGCCTCCGGGAATCAAATGGCGAAATCGGGGACTTCCAATTCCTCTAATGTCTATGCTGACGGGTCCAGCAATGGAGGAGATGAGGACTCCTGCTCTACACGCGGTGGGGACGTCTTCACCTTTAATTTCGATATCCTTAAGGAGGAAGGCGTGAAAGAAGTCGCAAACAAGGAATTATTTCTGTCTAGTGAAACTAAAGGAGTGGATGGCGAGTCCGCGAATTGGCAGAGTCAGTTTTTGTCGGCCCTTCCATCGAGAAAGAGCTGGATGAGTCTTTCCTTTGGTCATCAGGGTGGTAACGGAGAGATGAATATGGTCCAGGTTCAGCAGCAACCTCCTCGACAGCAATTGAAGAAAAGCAGACGGGGTCCAAGGTCTCGGAGCTCGCAGTACAGAGGAGTCACCTTTTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTGGGTTTGATACGGCTCATGCCGCTGCCAGCTGGATGGTTGAACTCCTCCATTGACTGGAGAAATTTCATATTTAGAGCCTACGACCGTGCTGCTATTAAGTTTAGGGGAGTTGATGCCGACATCAATTTCAATCTCAGTGATTACGAGGAGGATCTTAAGCAGATGAAAAATCTCACCAAAGAGGAATTCGTGCACATAGTTCGTCGCCAGAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTAACACTGCACAAGTGTGGTCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCGGCTATCAAATGCAACGGAAGGGAGGCAATGACCAACTTTGAATTAAGAACATACGAAGGAGAGATGAAGCCTGAGGTCATTACTGAAGGCGGCGGTCTCAATCTTGACCTCAACTTGGGTGTAGCAACACCAGGCAGTGGGTCGGTAGAAAATAGGGGCTATCAGTTACAACCTATCCCTTACAACATGCATACCGGAAGAAGTTCAAGGAAGCAGATCAATATTAATTCAGTAGATGGTGATCCATCGTTGAAAAGGCCAGCTGTTACTGAGGAGTGTCCTTTTGTATGGAATGGCATCTATCCTAGTTTCTTTCCCAACGAGGAAAGGGTTGAGAGATTCGGGAGAGATCATTCACAAGGACTGCCTCGACGGGGTTGGCAAACGCAAGGCCCGGTTACTGCTACGCCGGCGCCCCCGTTCTCTGCTGCAGCATCATCAGGATTCTCAACAGCTACTTTTCCTTTCGTTACTATCTTTCCATCAAAATCTCTGAGTTTGAGCTCAATTCCCCATGATATCCGTTTTGATCCGTCTGGCAGCAACATAACTCAGCATTGCCAGGCCAAGCCCCCGCACGGACCCCCTTGA 1506 0.4814 MFDLNLNADATDTAYNHESIKFSDELTEASGNQMAKSGTSNSSNVYADGSSNGGDEDSCSTRGGDVFTFNFDILKEEGVKEVANKELFLSSETKGVDGESANWQSQFLSALPSRKSWMSLSFGHQGGNGEMNMVQVQQQPPRQQLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVGLIRLMPLPAGWLNSSIDWRNFIFRAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLTKEEFVHIVRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAMTNFELRTYEGEMKPEVITEGGGLNLDLNLGVATPGSGSVENRGYQLQPIPYNMHTGRSSRKQININSVDGDPSLKRPAVTEECPFVWNGIYPSFFPNEERVERFGRDHSQGLPRRGWQTQGPVTATPAPPFSAAASSGFSTATFPFVTIFPSKSLSLSSIPHDIRFDPSGSNITQHCQAKPPHGPP 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3827 501 SMART rav1_2 262 325 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 SMART rav1_2 158 232 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 SUPERFAMILY DNA-binding domain 261 320 IPR016177 GO:0003677
Acco01g3827 501 Pfam AP2 domain 261 311 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 119 355 - -
Acco01g3827 501 Gene3D AP2/ERF domain 261 321 IPR036955 GO:0003700|GO:0006355
Acco01g3827 501 Gene3D AP2/ERF domain 157 227 IPR036955 GO:0003700|GO:0006355
Acco01g3827 501 ProSiteProfiles AP2/ERF domain profile. 262 319 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 MobiDBLite consensus disorder prediction 31 58 - -
Acco01g3827 501 FunFam AP2-like ethylene-responsive transcription factor 261 321 - -
Acco01g3827 501 MobiDBLite consensus disorder prediction 137 158 - -
Acco01g3827 501 ProSiteProfiles AP2/ERF domain profile. 158 226 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 PRINTS Ethylene responsive element binding protein signature 301 321 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 CDD AP2 261 319 IPR001471 GO:0003700|GO:0006355
Acco01g3827 501 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3827 Acco-ChrAcco01 54037136 54041073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3827 141 345 AP2-EREBP Transcription Factor Family AT4G36920 72.115 1.31e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g3827 AP2 3e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3827 01 54037136 54041073 Acco08g0228 08 1669991 1673464 CCT
Acco01g3827 01 54037136 54041073 Acco01g3827 01 54037136 54041073 ECH