Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3821 ATGGATCCTTCCCGTGTACAACATCAGCAAATGTCAAACCAATCACTGGAGAACATGATAGCGTGCTCAAAAGCACAGCAAGAGAGGAAGCCAAGGCCTCAGCCAGAAGAAGCACTGAAATGCCCAAGATGTGACTCCACCAACACCAAATTCTGTTACTACAACAATTACAGTCTTTCTCAGCCAAGATACTTCTGCAAGTCATGCAGGAGATACTGGACCAAAGGAGGAACACTGAGGAATGTTCCGGTGGGTGGAGGCTGCAGGAAGAACAAGAGATCTTCATCATCAAAGAGGGCTCAAGATCAACCACTCACACCGCACAACAACCCACTTGCTGCCATCCCTTCATTATCTTATGATTCCAACGACCTTACCCTCGCATTAGTTAGGCTCCAAAAGCAATCCACCGGGCAATTGAATTTTGATGACCATGATCTTTCAATTCTGGGGAATCCCACCAGCTCCCATTTTGATATTCTTGGCAACACCACAAGTCCTGGATTTTTGGATGCATTTCGAAGTGGGTTCATGGAAACCCAGCAACAGAGTCATAATTTGCAGAATCTGTATTGTGGATATGGAAATGGAGACATGGGAGAGGTGGACAATGGCAACGCAGAGATGATGCTACCCTATGATCATGAAATCAATAATAATGTACCCACAACGCAAGCCGTGTCGGTCACTACTATGAAGCAAGAAATCATGTGTAATGGCAGGGAACAAAGTGAGAACAAGGTCTTGTGGGGTCTTCCATGGCAATTCAATGGGGACAATATAAACATGGGAGGGCTTGATTCAGGAAGAGCAAGTTGGAACAATGGTCTCAGTTCATCTTGGCACGGCCTTCTCAATACTAGCTTCAAGATATGTCAGCGTCGTATTTTACCCAGGTTGATGAGAATTGAGCAAAACCCAGCTAAGTCAGCTAATCAGCTTACACTCCCCACTTGTTTCTTCCTTCTTCCACATTCGTCCTCTTCAATTCTCAAGTCAAGGCCCCACTTTTCTGTCTCAAGTAATGTTACTTTTTTTGTTGCTCGGGCATCAAGTCTTCAAGGCTCTCACAAAACCCAAACAAGAAATAGAGGTTGGCAGAAAGCACTTTAA 1113 0.4474 MDPSRVQHQQMSNQSLENMIACSKAQQERKPRPQPEEALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSKRAQDQPLTPHNNPLAAIPSLSYDSNDLTLALVRLQKQSTGQLNFDDHDLSILGNPTSSHFDILGNTTSPGFLDAFRSGFMETQQQSHNLQNLYCGYGNGDMGEVDNGNAEMMLPYDHEINNNVPTTQAVSVTTMKQEIMCNGREQSENKVLWGLPWQFNGDNINMGGLDSGRASWNNGLSSSWHGLLNTSFKICQRRILPRLMRIEQNPAKSANQLTLPTCFFLLPHSSSSILKSRPHFSVSSNVTFFVARASSLQGSHKTQTRNRGWQKAL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3821 370 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Acco01g3821 370 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 200 IPR045174 GO:0003700|GO:0006355
Acco01g3821 370 MobiDBLite consensus disorder prediction 1 22 - -
Acco01g3821 370 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Acco01g3821 370 MobiDBLite consensus disorder prediction 1 39 - -
Acco01g3821 370 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Acco01g3821 370 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3821 Acco-ChrAcco01 53971579 53977282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3821 1 287 C2C2-Dof Transcription Factor Family AT2G28510 40.000 1.74e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco01g3821 zf-Dof 6.7e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3821 01 53971579 53977282 Acco08g0237 08 1763950 1765486 CCT
Acco01g3821 01 53971579 53977282 Acco01g3821 01 53971579 53977282 ECH