Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3818 ATGGAGGGCAGTGACGCAACCATTGGTCTTTCACAATCTTCCACTAATTCCTCATCTGCTTCCGTTTCCACCCCACAAGTTATCGCAAGCCCTTGTGCTGCCTGCAAGATTCTCCGGCGCCGATGTGCCGACAAATGCGTTTTAGCTCCCTATTTCCCTCCCACCGACCCCGCCAAGTTCACCATCGCCCACCGTGTCTTCGGCGCCAGCAACATCATCAAGTTCTTGCAGGATCTCCCGGAGAATCAGAGAGCTGATGCAGTGAGCAGTATGGTGTACGAGGCAAGTGCAAGAATCAGAGACCCCATATATGGCTGTGCCGGTGCCATTTGCCAGCTTCAAAAGCAAGTGAATGAGCTTCAAGCACAGCTTGCCAAGTCTCAAGCAGAGCTCGTCAATATGCAACTACAGCAAGGCAATCTGGTGGCTCTCATTTACACGGAAAGGCCTCAGACCCCTTTCACTCCTCAGCAATCTGAATCGCCACAGCATTCTCTTGACGAGTTCATTTCAACTCCTCCACACACCAACGCCTATCAGAGCAATCTCAACTTCTTCGACGACAACACCAGCTTTAACTCACTCTGGGAGCCTCTCTGGACATGA 606 0.5165 MEGSDATIGLSQSSTNSSSASVSTPQVIASPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQDLPENQRADAVSSMVYEASARIRDPIYGCAGAICQLQKQVNELQAQLAKSQAELVNMQLQQGNLVALIYTERPQTPFTPQQSESPQHSLDEFISTPPHTNAYQSNLNFFDDNTSFNSLWEPLWT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3818 201 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Acco01g3818 201 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
Acco01g3818 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 164 - -
Acco01g3818 201 Coils Coil 110 137 - -
Acco01g3818 201 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3818 Acco-ChrAcco01 53957283 53957971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3818 27 201 AS2 family AT2G28500 65.591 1.29e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco01g3818 LOB 4.1e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3818 01 53957283 53957971 Acco08g0241 08 1803351 1804421 CCT
Acco01g3818 01 53957283 53957971 Acco01g3818 01 53957283 53957971 ECH