Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3813 ATGCGGGTAAAGGTAGCTGGACTAGGGGTTGCAATTTGTGATTCCAGGGACTTTCTAATATTTGAAGTAAAGAAGCCTCTTGAAGCATTTGAAAACGGCGGTGTCTTGCTGAGCAATGAATGTGCTGAGCTGCGTGCCACGGCTGAAGGCCTTGATACAGCTTTTAACTTGGGATTACAAAGGGTTACCTTTTCTTTTGACGACCACATGCTTTACCAATACGTCACTGGCAGAGTGCTACCAAGCCAGCATGATAAGTTTGCTGGTTTACTCGATCAGATATCTCATCTTCAAAAGAAATTTGTATATTGTGAACCATCACTCGTTGAACAAGACCGTATTAGATATGCCTTTAAATTTGCAAGACAAGCTTTAGTTTCTCAAATCAAGTGGTCTGCAGAAAGTGATAAAGGCAAAAGCTTTAAGGAAACCTGTCCAATTTGTTTTGAAGATACTGATATTGAAAAGATGTTTTCAGTGGACCACTGCTTGCATAGATATTGTTGTTCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTTAACGGGATGATGGCAGAGTGCCCTCATGAAGGTTGTAAATCTGATGTGACTGTTGATAGCTGCAAAAAAATTTTAGCGCCAGAATTAGTTGAAGTTGTTAACGAAAGGATTAAGGAATCAGCTATCCCTGTCACAGAGAAATTGTATTGCCCATTTCCTAGCTGTTCAGCATTAATGTCAAAGTACGAGGCCTTAGAATACACTAAGACCACATATGTTGGAGCTGAAGAATAAGATTCTAAGCTGAAGTCTCTTGCCTCCGAGAAACTGTGGCGGCAGTGTGTAAAGTGCAATCACATAATTGAACTAGCTGAAGGTTGCTATCATATTACTTGCAGATGTGGGTATGAATTTTGCTACACATGTGGAGCAAAGTGGGAGAACAAGAAAGCAACATGCTCTTGCCCGATCTGGGATGAGCGTAACATTATACGTGATCAACGTGGAAGAAGATGA 999 0.4104 MRVKVAGLGVAICDSRDFLIFEVKKPLEAFENGGVLLSNECAELRATAEGLDTAFNLGLQRVTFSFDDHMLYQYVTGRVLPSQHDKFAGLLDQISHLQKKFVYCEPSLVEQDRIRYAFKFARQALVSQIKWSAESDKGKSFKETCPICFEDTDIEKMFSVDHCLHRYCCSCMKQHVEVKLLNGMMAECPHEGCKSDVTVDSCKKILAPELVEVVNERIKESAIPVTEKLYCPFPSCSALMSKYEALEYTKTTYVGAEEXDSKLKSLASEKLWRQCVKCNHIIELAEGCYHITCRCGYEFCYTCGAKWENKKATCSCPIWDERNIIRDQRGRR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3813 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 223 IPR013083 -
Acco01g3813 332 CDD Rcat_RBR_unk 272 307 - -
Acco01g3813 332 SUPERFAMILY RING/U-box 262 323 - -
Acco01g3813 332 ProSiteProfiles TRIAD supradomain profile. 141 332 IPR044066 -
Acco01g3813 332 Pfam IBR domain, a half RING-finger domain 264 314 IPR002867 GO:0008270
Acco01g3813 332 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Acco01g3813 332 Gene3D - 235 332 - -
Acco01g3813 332 Gene3D - 2 132 IPR036397 GO:0003676
Acco01g3813 332 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Acco01g3813 332 Pfam Reverse transcriptase-like 5 124 IPR002156 GO:0003676|GO:0004523
Acco01g3813 332 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 127 317 IPR031127 GO:0004842|GO:0016567
Acco01g3813 332 SUPERFAMILY RING/U-box 143 225 - -
Acco01g3813 332 FunFam RBR-type E3 ubiquitin transferase 140 225 - -
Acco01g3813 332 FunFam RBR-type E3 ubiquitin transferase 244 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3813 Acco-ChrAcco01 53932870 53934596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3813 5 305 C3H Transcription Factor Family AT2G19610 32.258 1.17e-53 179