Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3810 ATGGATCTAGTCAATAGTTGCAAGGAAAAATTGACATATTTTCGTATAAAGGAGCTCAAAGATGTACTCACTCAGTTAGGCCTTTCAAAACAGGGAAAAAAGCAGGATCTTGTTGATCGGATATTATCCATTATCTCAGATGAACAAGTTTCCAAATTGTGGGCTAAAAAGAATGCTGTTGGAAAAGAACAGGTGGCAAAATTAGTGGATGACACATATAGAAAGATGCAGATATCTGGAGCAACTGAGCTGGCATCAAAGGGTATGTCAGATAGCAGTAATGTGAAAATCAAAGGTGAAGTTGAAGATTCCTTGCAGTCAGTTACAAAGATTCGCTGTCTCTGTGGAAGTTCTTTGGAAACTGAGGCATTGATCAAGTGTGAGGATACAAGATGTCAAGTATGGCAACACATGAGTTGTGTTTTAATCCCAGAGAAACCTACAGACGTCCCACCAGTTCCTGATAAATTCTATTGTGAGATCTGCCGTCTCAGTCGTGCTGACCCTTTTTGGGTTCCAGTGGCACATCCTTTGTTTCCTGTGAAGTTGAACACGGCCAATGTTCCAACTGATGGCACTAACCCTGTGCAGAGTGTGGATAGATCATTTCAACTTGCAAGAGCAGACAAGGACTTGGTGTCTAAACCAGAATTTGATGTTCAGGCTTGGTGCATGCTTCTGAACGACAAGGTCCCATTCAGGATGCAGTGGCCTCAATATACAGATCTACAGGTCAATGGTGTACCTGTTCGTGCCATCAACAGACCTGGGTCACAATTACTTGGGGCTAATGGTCGAGATGATGGTCCAATTATCACGCCATATACAAAAGATGGAATAAACAAGATTTCCTTAACTGGGTGTGATGCTCGCCTTTTCTGTTTGGGGGTTCGTATTGTGAAAAGGCGGACAGTGCAACAGATCCTAAGCATAATTCCAAAAGAGTCTGACGGTGAGCCTTTTGAAGATGCTCTTGCACGGGTCTGCCGATGTGTTGGTGGTGGGAATGCAGCTGATAATGCTGATAGTGACAGTGATCTAGAAGTTGTTTCGGATACTTTTAGCATCAACCTCCGTTGTCCAATGAGTGGTTCAAGGATGAAGGTTGCTGGAAGATTCAAGCCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTGGAAATGAACCAGCGGTCGAGGAAGTGGCAATGTCCTATCTGTCTCAAAAATTATACATTGGAGAATATCATTATAGACCCTTACTTCAACCGTATCACATCTAAGATGATAAGTTGCGGTGAAGATGTGACAGAGGTTGAAGTGAAGCCTGATGGTTCTTGGCGTGTCAAGGCTAAGAGTGAAATTGAACGGCGAGATTTGGGTATTCTTGCACACTGGCACTTTCCTGATGGATCTCTATGTGTTTCTACTGATGAAGAAGTCAATAGAGTGGATGCATTTAAGCAGATCAAGCAGGAGGGTGTTTCTGATAGTCCTACTGGTTTAAAACTTGGCATAAGGAAGAATCATGATGGAGTTTGGGTTTTCAGCAAAGCCAGTGACACCAATACATCGTCAGGCAATAGATTGAAAGAGAACCTTGGAAATCATGAACAGGTTGTTATTCCAATGAGCAGCAGTGCCACTGAGAGTGGCCATGAGGGTGATGACCCTAGTGTAAATCAGGGTGGTGGTGATTTCTCAAACAATGGGACAGAAATGGATTCTTTCTATCTGAATAATGTTGATTCAGCGTGTGGGTTTGTTGAAAATAACACTGCTGCTCCAACTGGGGATGCTGAAGTTATTGTTCTGAGTGATTCTGAGGAAGAGAATGACAGGTTGGTATCTTCTGCAACTGACTACAAGAATAATCGAACTGATGCTGTTGGTGTTGGTTACTCTGTGCCACCTTCTGGAATTGCTGATTCTCATGCAGAAGATCCCACCCTTGGTGGCTTGGGACTTTTTAATGCTAATGAAGATGAATTTTCCATTTGGTCATCATTGCCTTCTGGAACTCAGGCAGGATTTCAGTTTTTCACTTCTGATGCAGATGTGTCAGATGCATTAGTCAATCTGCAGCATGGTCCTGTTAATTGTTCCACATCACTGAACGGTTATGCATTGCCACCAGATGCTACTCTGGGATCTAGCACTCTCATGCCAGATGCCTGTGTGGGTCGGTCTGATGCTGCTGATTTAAATGGTGGTTTAGTTGACAATCCGCTGGCATTTGCTGGAGATGATCCCTCACTCCAAATATTTCTCCCCACTAGACCTGTTGAATCATCTGGGCAGCATGAATTGAGAGACCAGGCAGATGTGTCTAATGGTGTGTGCAATGAGGATTGGATTTCTCTCAGGCTTGGAGGTGGTGCTAGTGGTAATAACAGCCATGCTACGACTCCAAATGGTCTGAATTCTAGACAGCAAATTCTATCCAGAGAACCTTCCACAGATGCTATGGCTGATACTGCTTCTTTGCTTCTTGGTATGAATGATGCTAGATCTGACAAGGCAATTAGACAAAGGTCGGACAGTCCGTTCTCATTTCCCCGTCAAAAACGTTCAGTAAGGCCCCGCTTGTATCTATCTATTAATTCAGATTCAGAGTAG 2604 0.4339 MDLVNSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSIISDEQVSKLWAKKNAVGKEQVAKLVDDTYRKMQISGATELASKGMSDSSNVKIKGEVEDSLQSVTKIRCLCGSSLETEALIKCEDTRCQVWQHMSCVLIPEKPTDVPPVPDKFYCEICRLSRADPFWVPVAHPLFPVKLNTANVPTDGTNPVQSVDRSFQLARADKDLVSKPEFDVQAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARLFCLGVRIVKRRTVQQILSIIPKESDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKVAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYTLENIIIDPYFNRITSKMISCGEDVTEVEVKPDGSWRVKAKSEIERRDLGILAHWHFPDGSLCVSTDEEVNRVDAFKQIKQEGVSDSPTGLKLGIRKNHDGVWVFSKASDTNTSSGNRLKENLGNHEQVVIPMSSSATESGHEGDDPSVNQGGGDFSNNGTEMDSFYLNNVDSACGFVENNTAAPTGDAEVIVLSDSEEENDRLVSSATDYKNNRTDAVGVGYSVPPSGIADSHAEDPTLGGLGLFNANEDEFSIWSSLPSGTQAGFQFFTSDADVSDALVNLQHGPVNCSTSLNGYALPPDATLGSSTLMPDACVGRSDAADLNGGLVDNPLAFAGDDPSLQIFLPTRPVESSGQHELRDQADVSNGVCNEDWISLRLGGGASGNNSHATTPNGLNSRQQILSREPSTDAMADTASLLLGMNDARSDKAIRQRSDSPFSFPRQKRSVRPRLYLSINSDSE 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3810 867 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Acco01g3810 867 SUPERFAMILY SAP domain 1 64 IPR036361 -
Acco01g3810 867 Coils Coil 600 620 - -
Acco01g3810 867 Pfam SAP domain 14 42 IPR003034 -
Acco01g3810 867 CDD SP-RING_Siz-like 357 406 IPR031141 -
Acco01g3810 867 Pfam PHD-finger 112 163 IPR019787 -
Acco01g3810 867 MobiDBLite consensus disorder prediction 540 567 - -
Acco01g3810 867 SUPERFAMILY FYVE/PHD zinc finger 108 166 IPR011011 -
Acco01g3810 867 CDD PHD_Bye1p_SIZ1_like 112 162 - -
Acco01g3810 867 Gene3D SAP domain 1 62 IPR036361 -
Acco01g3810 867 ProSiteProfiles Zinc finger SP-RING-type profile. 343 426 IPR004181 GO:0008270
Acco01g3810 867 SMART PHD_3 112 163 IPR001965 -
Acco01g3810 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 168 IPR013083 -
Acco01g3810 867 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 628 - -
Acco01g3810 867 SMART sap_9 11 45 IPR003034 -
Acco01g3810 867 FunFam E3 SUMO-protein ligase SIZ2 330 444 - -
Acco01g3810 867 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Acco01g3810 867 ProSitePatterns Zinc finger PHD-type signature. 113 162 IPR019786 -
Acco01g3810 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 444 IPR013083 -
Acco01g3810 867 Pfam MIZ/SP-RING zinc finger 356 404 IPR004181 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3810 Acco-ChrAcco01 53915635 53923570 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco01g3810 PHD 2.6e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3810 01 53915635 53923570 Acco01g3810 01 53915635 53923570 ECH