Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3787 ATGAGTTCTCAGGAAAAGGCTGTGAGTGAAGGCCATCACCCTGCTTCGTGCCTTAGAACGGTTTCCCTTCCAGTTCCTAAGGCTGATGATCCAATGGGTATGCCTGAGAAATCAACATGTGCCCGTCATTGGAAGCGGCAGAATCTTCTTCTAGAAATACCCCAAAGAACATCAGAAGATCATCGCCAAGATTTTGTTGGAATTAAGATGTCAATGACTCCAAGTCCCACTCCCAGGAGAGTCAATTTTCTAATGACTTCACGCTCTGTTGATGACCCGATTCATAATTGTCCCGGGCCTTCCGCGTCAAGAGGCAAACCATCCATTAAAAGTATCCTACCAAAGTTGAACTTCAAGCGTAAGACATCATCAGATATTGAGAAAGCTTTTACTGCAGCTCCAGAAAGCTCCTCTTCAGTCCCTCGAGAAAAGCTTTCAATTGCGTCATCATTGTCCCTTACTAAGATATTTACACCTAGAATTAAGAGAACGTCATCATTACCAGTAGATGAACTTCATTCCAACTCAAAAACTGCTTATGCTGAAAGTGTTGGTGGATCTCCATATAGAACAAAGGTGCCGACACAGATAGCCCGCTCTCAGTCGGTGCCTCTCACTGATCTAGATAAGGGCATAAAGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACTCCTCATGTGAAGGTAAAAAAGGAATTGTTGGCTACATCCCCATCCAAGGATACTGAAAACAATGACGACGACGACGACGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTTTGTAGGATTTGTTTGGTTGATCTATGTGAAGGAGGTGAAACCTTCAAGCTGGAATGCAGCTGCAAAGGTGAACTCGCTCTGGCACACCAAGAATGTGTCGTTAAATGGTTCAGTATCAAAGGCAACAAGACCTGTGATGTGTGCAAGCAGGAGGTTCAGAACCTTCCTGTCACACTCTTAAGGATCCAAAATGTTGTAGCTCAGAATGCGGGGGCGAATAGATCTTTGCGGGAAGATGCAGGTGCATACAGGGTCTGGCAGGAAGTTCCAGTGCTTGTTATTGTGAGTATGCTGGCTTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTGGGTCTGCTCTCTTCCATGACTTCTTCAACCATGGTGAATAGCAGGTTCATCTGGTTTTATGCATGCTCCCAATTTGCTCTCGTGGTTCTTTTCGCACATTTATTTTACACATTGGTTCACGTGCAGGCAGTTTTGGCAATCCTTCTGGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGGAGCTCTGTTCTTGTTGAAATTGCTCGATGGAGAAGAAGATGGCTGGCTTCATCAGAGCAGCATCAAGCACATTCAAGCCCTCCCAGCGGCGGTAACCAACAAAACTCGGTTTAG 1467 0.4485 MSSQEKAVSEGHHPASCLRTVSLPVPKADDPMGMPEKSTCARHWKRQNLLLEIPQRTSEDHRQDFVGIKMSMTPSPTPRRVNFLMTSRSVDDPIHNCPGPSASRGKPSIKSILPKLNFKRKTSSDIEKAFTAAPESSSSVPREKLSIASSLSLTKIFTPRIKRTSSLPVDELHSNSKTAYAESVGGSPYRTKVPTQIARSQSVPLTDLDKGIKRMDSFFRVIPSTPHVKVKKELLATSPSKDTENNDDDDDDEGEDIAEEDAVCRICLVDLCEGGETFKLECSCKGELALAHQECVVKWFSIKGNKTCDVCKQEVQNLPVTLLRIQNVVAQNAGANRSLREDAGAYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWFYACSQFALVVLFAHLFYTLVHVQAVLAILLATFAGFGVVMSGSSVLVEIARWRRRWLASSEQHQAHSSPPSGGNQQNSV 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3787 488 PANTHER OS02G0165000 PROTEIN 30 475 - -
Acco01g3787 488 MobiDBLite consensus disorder prediction 470 488 - -
Acco01g3787 488 SMART ringv_2 263 312 IPR011016 GO:0008270
Acco01g3787 488 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Acco01g3787 488 MobiDBLite consensus disorder prediction 469 488 - -
Acco01g3787 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 319 IPR013083 -
Acco01g3787 488 SUPERFAMILY RING/U-box 260 315 - -
Acco01g3787 488 MobiDBLite consensus disorder prediction 232 255 - -
Acco01g3787 488 CDD RING_CH-C4HC3_MARCH 264 312 - -
Acco01g3787 488 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3787 Acco-ChrAcco01 53796216 53800636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3787 250 367 C3H Transcription Factor Family AT2G37950 33.600 5.15e-13 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3787 01 53796216 53800636 Acco08g0270 08 2020200 2028114 CCT
Acco01g3787 01 53796216 53800636 Acco01g3787 01 53796216 53800636 ECH