Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3779 ATGGATATCAAGATTTGCTCGGAGTCTGAAGCCCTAGATCTTTCGAAATCTGCAACAATGCCGCCGAAGTTGGACCCCTCACAAGTTGTCGACGTCTTCGTCCGAGTCACAGGCGGTGAGGTCGGTGCTGCAAGTTCACTAGCTCCCAAGATAGGCCCCCTCGGGTTGTCCCCCAAGAAGATCGGAGAAGATATTGCCAAAGAGACTGCCAAGGACTGGAAGGGATTGAGGGTCACCGTAAAGCTTACTGTCCAAAACCGTCAGGCGAAGGTGTCGGTGGTGCCCTCTGCTGCTGCGCTAGTTATCAAGGCCTTGAAAGAACCCGAGCGAGACCGCAAGAAGACCAAGAACATCAAGCACAATGGTAATATATCTCTCGACGATGTGATCGAGATCGCCCGAATTATGAGACCCAGGTCGATGGCCAAGGACCTCAGCGGGACTGTGAAGGAGATCCTGGGCACATGCGTCTCCGTTGGCTGCACGGTGGACGGGAAAGACCCGAAGGATTTACAGCAGGAGATCACTGATGGGGATGTTGAAATCCCTCAGGATTGA 558 0.5341 MDIKICSESEALDLSKSATMPPKLDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARIMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3779 185 Gene3D - 15 100 IPR036796 -
Acco01g3779 185 PANTHER 60S RIBOSOMAL PROTEIN L12 20 170 IPR000911 GO:0003735|GO:0005840|GO:0006412
Acco01g3779 185 FunFam 60S ribosomal protein L12 20 100 - -
Acco01g3779 185 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 17 106 IPR036796 -
Acco01g3779 185 SUPERFAMILY Ribosomal protein L11, C-terminal domain 95 168 IPR036769 -
Acco01g3779 185 SMART rl11c 32 164 IPR000911 GO:0003735|GO:0005840|GO:0006412
Acco01g3779 185 ProSitePatterns Ribosomal protein L11 signature. 150 165 IPR020785 GO:0003735|GO:0005840|GO:0006412
Acco01g3779 185 MobiDBLite consensus disorder prediction 164 185 - -
Acco01g3779 185 CDD Ribosomal_L11 32 163 IPR000911 GO:0003735|GO:0005840|GO:0006412
Acco01g3779 185 Pfam Ribosomal protein L11, RNA binding domain 94 163 IPR020783 GO:0003735|GO:0005840|GO:0006412
Acco01g3779 185 Gene3D - 101 183 IPR036769 -
Acco01g3779 185 Pfam Ribosomal protein L11, N-terminal domain 34 88 IPR020784 -
Acco01g3779 185 Hamap 50S ribosomal protein L11 [rplK]. 28 165 IPR000911 GO:0003735|GO:0005840|GO:0006412
Acco01g3779 185 FunFam 60S ribosomal protein L12 101 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3779 Acco-ChrAcco01 53767845 53769896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3779 20 185 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 90.361 1.12e-109 308