Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3773 ATGAAGGAAGTTGGCAAGAGCTTGGATCCGCAACTCTGGCACGCGTGCGCCGGTAGTATGGTTCAAATGCCTCCGGTGAACTCCAAAGTCTTTTACTTTCCTCAAGGCCACGCCGAGCACGCTCAGGCCAACCTTAATTTTCCACCCTCCTTAAGGATTCCACCGCTTATTCTTTGTCGTGTGGTATCGGTGAAATTCTTGGCCGACCCAGAAACTGATGAAGTTTTTGCGAAGTTAAGGTTGGTTCCTTTGAGAAATTCCGAGCTCTATTTCGACGACGATGGGATTACGGACGGTAATGGATCGGAGAATTCAGAAAAGCCAGCATCTTTTGCCAAGACATTAACCCAATCTGATGCGAACAATGGTGGGGGCTTCTCTGTTCCAAGGTACTGCGCAGAAACTATCTTCCCACGGCTGGATTACTCTGCTGAACCGCCGGTTCAAACCGTGGCTGCCAAGGACGTTCACGGCGAAACTTGGAATTTCAGACACATATACAGGGGAACACCTCGTCGGCACTTACTAACCACTGGGTGGAGCACTTTCGTGAACCAAAAGAAACTTGTTGCTGGGGATTCTATTGTTTTCTTGAGGGCTGAAAACGGGGACCTCTGTGTCGGAATTCGCCGAGCAAAACGTGGTGGTTTTGGCAGCCGGATGCAAACCCCGTCAGCCGGCTGGCGTGGTGGTGCCGCCGGAGGTGGAGCGGGGCCTTTAGGGGGCTTCTCTTATTTCTTGAGGGAGGAGAACAAATTACTGCCTAATGCTTGTGGGAATTCAAGCCCTGGAAGAGCAAAAGTGAGGCCTGAATCTGTGATGGAAGCTATGACACTGGCTACTAGTGGTCAGGCATTTGAAGTAGTTTATTATCCTCGAGCCAGTACTCCTGAGTTTTGCATTAAGGCTGCATCTGTGAGGGCTGCTATGAGAACTCAATGGTGCTATGGCATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCTAGAATTAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTCGTCGATCATGTGCGTTGGCCCAACTCTCCCTGGCGACTTCTTCAGGTTACTTGGGATGAACCAGATTTGCTGCAGAATGTGAAGCGTGTTAGCCCATGGTTGGTAGAATTGGTATCAAACATGCCAGCCATTCATTTCACGCCTTTTTCTACGCCAAGGAAGAAGCTGCGGCTTACACCGCACTCGGACTTCCGCCTTCATGGCCAATTTTCAATACCGACATTTTCAGGCAACCCTCTTGGGACTAGCAGCCCCTCGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTCTCTCGGATCTCCAACTTAACAATAAACTACAGTTGGGGTTGCTTCCAACTAACATCCAGCAGGTTGATATACATCCTGGGATGTCCAATGGTAAGACGGCAAACAATAGTGAAAACAATGAAAGCTTGTCCTGCTTGCTGACCATGGGAAATTCTTTCAAGAGTTTGGAGAAATCTGATAATGTGAAGAGACAACGGTTTTTTCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTCGAAGCTGTTCTAGTGATAAGTTGTCTCCGAATGTTAGTGAAAAAGATTTGCCAGATGAAAATAGAGACAAGACAATGTGCAAATTAGGTGATTCGCAATCTGGTCTTTCTCAGCAGTTTCCACCTGGAAAATCTTCTAATGTTGAGTTTTCTTGGCAACTAGGCTTGGATAATGGTCATTGTAAGGTTTTCATGGAATCAGAGGACGTGGGACGGACCCTTGACCTATCATGTCTTGGTTCCTATGAAGAACTATACAGAAGACTGGCCAACATGTTTGGGATTGAAAGATCTACAATGTTGCGCCATGTACTCTACTATGATGCTTCAGGTGCTGTTAAGCAAACTGGACTAGAACCCTTCAGCGACTTCATGAAAACAGCAAAAAGATTGACAATTCTGACCGATTCAGGCAGAAAAGAGGCACGGATTTGGGAGCGGCTGAATCTTTTTATCAACATAGGCATCTTGATTTTCTTCTTAAAGTCTACATGTGCCAACAAATAA 2106 0.4677 MKEVGKSLDPQLWHACAGSMVQMPPVNSKVFYFPQGHAEHAQANLNFPPSLRIPPLILCRVVSVKFLADPETDEVFAKLRLVPLRNSELYFDDDGITDGNGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVAAKDVHGETWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGFGSRMQTPSAGWRGGAAGGGAGPLGGFSYFLREENKLLPNACGNSSPGRAKVRPESVMEAMTLATSGQAFEVVYYPRASTPEFCIKAASVRAAMRTQWCYGMRFKMAFETEDSSRISWFMGTIASVQVVDHVRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIHFTPFSTPRKKLRLTPHSDFRLHGQFSIPTFSGNPLGTSSPSCCLSDNAPAGIQGARHAQFGISLSDLQLNNKLQLGLLPTNIQQVDIHPGMSNGKTANNSENNESLSCLLTMGNSFKSLEKSDNVKRQRFFLFGQPILTEQQISRSCSSDKLSPNVSEKDLPDENRDKTMCKLGDSQSGLSQQFPPGKSSNVEFSWQLGLDNGHCKVFMESEDVGRTLDLSCLGSYEELYRRLANMFGIERSTMLRHVLYYDASGAVKQTGLEPFSDFMKTAKRLTILTDSGRKEARIWERLNLFINIGILIFFLKSTCANK 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3773 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco01g3773 701 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Acco01g3773 701 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Acco01g3773 701 Gene3D - 314 387 - -
Acco01g3773 701 FunFam Auxin response factor 109 213 - -
Acco01g3773 701 SMART B3_2 111 213 IPR003340 GO:0003677
Acco01g3773 701 Gene3D - 109 213 IPR015300 -
Acco01g3773 701 FunFam Auxin response factor 314 387 - -
Acco01g3773 701 ProSiteProfiles PB1 domain profile. 591 671 IPR000270 GO:0005515
Acco01g3773 701 CDD B3_DNA 110 211 IPR003340 GO:0003677
Acco01g3773 701 Gene3D - 590 675 - -
Acco01g3773 701 MobiDBLite consensus disorder prediction 533 554 - -
Acco01g3773 701 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco01g3773 701 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3773 Acco-ChrAcco01 53736498 53739755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3773 6 677 B3 DNA Binding Superfamily AT4G30080 58.297 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco01g3773 B3 1.1e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3773 01 53736498 53739755 Acco08g0287 08 2169287 2172078 CCT
Acco01g3773 01 53736498 53739755 Acco01g3773 01 53736498 53739755 ECH