Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3772 ATGTCAGAGGACATTGCAAACATGAAGGATCCTTTGTTTTTGGACAAGAGTTTCAATGGTCTATCGGATGAAATCTTTGATGATGTCATAAAGTTCTTTGATTTTCCACTGGAAGATGTGGATGCTAACATTGCGGAAGAAGAAGACTGGGATGCTCAATTTAAACGCATCGAAGAGCCTTCTTTTGATGTGTTCTCGGTATCATCGTCTGAATTGTGCGGTAAAACTCAAAATAACAATTTCCACCTTGGGAGGACTTTCTCTACTTGTAAGGAGACTTCTGCCCCAGTTGCCAAGCCTAACATCTACCTCAATAAAAAGGATCAACCCCAGTTTCGAACCTACAGTCCAGTTTCTGTATTTGAAAGCACTACATCTTCCTCGGGTGAAAGTTCCAACTTTGAACTGCCCATCATCCCGGGGAAGCGCCCTCGAGGGAGACGCCGGCGTCTTTCCAGCTTCACCTCTCTATTGCCAATCCAGTTGGCATTGCGAAAATCTCAAAAGGGAGCTGCCAAAGGAGAGCTATTAAATGGGGTGAAAAGGAAGCAGAGGAAGAAGGATCTCTCCATTCTCTCAAGTGAAGTCAAGATGAAGAAATCATCATTAGGAAATTCAGGTGCGCCTACAAAATGCATGCATTGTGAGGCGACCAAGACGCCGCAGTGGAGGGAGGGACCTATGGGTCCAAAAACTCTGTGTAATGCATGTGGAGTTCGATACAGGTCAGGTCGCTTGTTCCCCGAATACCGCCCTGCGGCTAGTCCCACTTTTGTACCATCTCTGCATTCCAACTCTCACAAGAAGGTCATAGAGATGAGAAACTCAGTCGTGCAAGAATCTGGGGCTTCTTCTATTTTGGGTTTGTCATCGATCTAA 879 0.4551 MSEDIANMKDPLFLDKSFNGLSDEIFDDVIKFFDFPLEDVDANIAEEEDWDAQFKRIEEPSFDVFSVSSSELCGKTQNNNFHLGRTFSTCKETSAPVAKPNIYLNKKDQPQFRTYSPVSVFESTTSSSGESSNFELPIIPGKRPRGRRRRLSSFTSLLPIQLALRKSQKGAAKGELLNGVKRKQRKKDLSILSSEVKMKKSSLGNSGAPTKCMHCEATKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHKKVIEMRNSVVQESGASSILGLSSI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3772 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 269 - -
Acco01g3772 292 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Acco01g3772 292 Gene3D - 204 281 IPR013088 GO:0006355|GO:0008270
Acco01g3772 292 ProSiteProfiles GATA-type zinc finger domain profile. 206 242 IPR000679 GO:0006355|GO:0043565
Acco01g3772 292 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Acco01g3772 292 FunFam GATA transcription factor 202 285 - -
Acco01g3772 292 CDD ZnF_GATA 211 258 IPR000679 GO:0006355|GO:0043565
Acco01g3772 292 PANTHER GATA TRANSCRIPTION FACTOR 42 278 - -
Acco01g3772 292 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3772 Acco-ChrAcco01 53723977 53727533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3772 18 291 C2C2-Gata Transcription Factor Family AT1G08010 38.721 2.92e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco01g3772 GATA 5.2e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3772 01 53723977 53727533 Acco01g3772 01 53723977 53727533 ECH