Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3741 ATGTGCCCCACGTACAGATCTTGATGCCATGATGACGCAGCTCTGGCTGCCGCTGCTGTGGTTGTGGTGACTTGTGACATTAGGTCTGATATTTTAGCCACCGCCCTCCCGAGTTCTGCAGAATCGGCGATAAATTCACTCTTTTTGCCTGCTGCCGATCCTCGCAGTCTCACTCAGATACGCAATCCGAATCGGACATTAAGGATGGTGTCGGACGCGAGTAAGAAGAAGGCGGCGCAGAAGAAGGCTGCCGCCGCTGCCAAGAGGGGAGGGAAGGCCGCGGCCGCTTCATCAAAGGCTGCGGCATCGGAGGCGCAGAAGGCTGCTGATAAGCTTGCCGATGGAGTCGGTGAAATCCAGATATCCGATCGCACGTGCACCGGCGTCCTTTGTTCACATCCTCTTTCGAGGGATATTCGGATAGAGTCTCTATCAGTTACTTTTCATGGACATGATCTCATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGGCGCTATGGGCTACTTGGATTAAATGGTTGTGGAAAATCGACTCTCCTTACAGCATTAGGGTGTCGGGAGCTTCCTATTCCTGATCACATGGATATTTATCACCTTTCTCGAGAAATTGAAGCTTCTGACATGTCTGCGTTGCAGGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGAAAGAAGTTGAAATTTTGGCAGCACAGGATGATGGAGGTGGTGAAAGTCTTGAACGTGTTTACGAACGATTGGAAGCTATGGATGCATCAACTGCAGAAAAACGTGCTGCTGAAATCTTACATGGCCTTGGTTTTAACAAGCTGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGGATAGCTTTAGCACGTGCTCTGTTCATGAACCCAACCATTCTTTTACTTGACGAACCAACTAATCATTTAGATCTGGAAGCATGTGTGTGGCTGGAGGAAAATTTGAAGAAGTTTGACCGCATTCTGGTTGTTGTTTCACATTCTCAAGATTTTCTTAATGGTGTTTGCACAAACATCATCCACATGCAAAACAGGAAGCTGAAAATCTACACTGGTAACTATGATCAATATGTTCAGACACGCGCTGAATTGGAAGAAAACCAGATGAAGCAGTACAGGTGGGAACAGGAGCAAATTGCTTCGATGAAGGAATATATTGCTCGATTTGGGCATGGATCCGCTAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGGCTTACTGAGAAGGTTGTGAAAGACAAAGTCTTGGTATTCCGCTTTGCTGATGTGGGAAAGCTCCCCCCACCTGTGCTTCAGTTTGTTGAGGTGGCTTTTGGCTACACCCCAGATAATCTCATCTACAAAAACCTTGACTTTGGGGTGGACTTAGACTCTAGGATTGCACTCGTTGGACCCAATGGAGCTGGGAAGAGTACACTGCTGAAGCTAATGACTGGGGATCTGACTCCTACTGATGGCATGGTCCGACGACACAACCATCTTCGCATAGCTCAATTTCATCAGCACTTGACTGAGAAGCTAGACTTAGAAATGCCTGCCCTCCAGTTTATGATGAAAGAGTACCCTGGAAATGAGGAAGAGAAAATGAGGGCAGCTATTGGGAAGTTTGGACTGTCAGGTAAAGCCCAGGTGATGCCCATGAAGAATTTATCAGATGGGCAGAGGAGCCGGGTAATTTTTGCTTGGTTAGCTTGGAGGCAGCCTCACTTGCTGCTTCTGGATGAACCGACTAACCATTTGGATATTGAGACAATTGACTCTCTGGCTGAGGCCTTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCAGATCAAGCTGTGACCAGATGGGAGGGTGACATTATGGAATTCAAGGAGCATCTAAGGGCAAAGGCAGGCTTATCTGATTGA 1998 0.4685 MCPTYRSXCHDDAALAAAAVVVVTCDIRSDILATALPSSAESAINSLFLPAADPRSLTQIRNPNRTLRMVSDASKKKAAQKKAAAAAKRGGKAAAASSKAAASEAQKAADKLADGVGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTALGCRELPIPDHMDIYHLSREIEASDMSALQAVISCDEERLKLEKEVEILAAQDDGGGESLERVYERLEAMDASTAEKRAAEILHGLGFNKLMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNRKLKIYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFADVGKLPPPVLQFVEVAFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLTPTDGMVRRHNHLRIAQFHQHLTEKLDLEMPALQFMMKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKEHLRAKAGLSD 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3741 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 139 379 IPR003439 GO:0005524
Acco01g3741 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 644 IPR027417 -
Acco01g3741 665 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 82 660 - -
Acco01g3741 665 Gene3D - 413 663 IPR027417 -
Acco01g3741 665 ProSitePatterns ABC transporters family signature. 283 297 IPR017871 GO:0005524|GO:0016887
Acco01g3741 665 CDD ABCF_EF-3 139 356 - -
Acco01g3741 665 Pfam ABC transporter 157 311 IPR003439 GO:0005524
Acco01g3741 665 FunFam Abc transporter f family member 1 139 403 - -
Acco01g3741 665 SMART AAA_5 475 663 IPR003593 GO:0016887
Acco01g3741 665 SMART AAA_5 163 365 IPR003593 GO:0016887
Acco01g3741 665 CDD ABCF_EF-3 450 641 - -
Acco01g3741 665 Gene3D - 139 403 IPR027417 -
Acco01g3741 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 378 IPR027417 -
Acco01g3741 665 Coils Coil 357 377 - -
Acco01g3741 665 Pfam ABC transporter 466 597 IPR003439 GO:0005524
Acco01g3741 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 450 665 IPR003439 GO:0005524
Acco01g3741 665 FunFam ATP-binding cassette sub-family F member 3 410 664 - -
Acco01g3741 665 Pfam ABC transporter 350 426 IPR032781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3741 Acco-ChrAcco01 53502875 53507458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3741 283 337 Calmodulin-binding Proteins AT2G36910 45.614 6.33e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3741 01 53502875 53507458 Acco01g3741 01 53502875 53507458 ECH