Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3729 ATGCTCTCATTCCGTTCTTGCTTCTCTCCCTCATTCTTTCACCCCGTCAGGTCTCTCTTTCGTCTTGAATTTTCTCTCACACCCCCTAAAACCTTCGCGTTGAAGCCTATCCTCTTCCCTACACATAATTGCGGTCGCATCATGTCGTCGCGACCGTCTGCCTTTGATGCTCTCATGTCAAGTGCTCGTGCCGCTGCCAAGAAGAAGCCCCAATCATCGTCGCCCAAGAAACGAAAAACCCAGGATTCTAATTCAACCCAAAACCCTAAACTCCTCAAGAGCACGGAAAGTACTGGTCAGTCTTCGGAACCCTGCAACGACACCAAATGCACTGACATTAAAGATTCCGAGAAGGTACAAGAGCCGACAAAAGAAGACTTGAGCAATGGTGGGCTGACAGCGTCAGATAGTGCACTTGCGGCGAAGAGAACGCGTGTTGTAGGTTCTCATGAGAAGGTTACAGAACTGAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCCGCAGATTTTGACCCTAGTTCGATATCTTGCTGGGACAAGGGTGAACCTGTGCCCTTTCTTTTTCTCTGTTTGGCATTTGATATGATTTCGGATGAAAGTGGACGGATTGTGATGACAGATATAGTGTGCAATATGCTGAGGACTGTCATGTACTCTAGTCCCGAGGATCTGGTGGCTGTTGTTTATCTTTCTTCAAATAAGATTGCTCCGGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATCATTAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGACGCAGATTAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACCATTAAGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGACAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATTTAATTCGTCTGCTTCAGTCAAAGTTGCGGATAGGGTATGCGGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCGCCTTCTGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTCTGTATGACAAAATAATTCCTGCATTGCTTAGTGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTTACTCCTGGTGTTCCAGTCGGACCCATGTTGTCTAAAGCAACTAAGGGTGTATCAGAAGTTCTAAATAAATTCCAAGGTATAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATGATGGATCTGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAATCGTCTGTGTCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGAGTAAAAAGGAAAATTCTTCCTTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTTGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGAGAGCCACTGCTTCAGAAAAACCTAAAAATCCGGAGAGAGCATCTCTATGCCTCTTTCGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAGCAATAACTTCAACTGATGTTGAGGAAATACAAAAGTTTCTTGATGCAGCAGTTGGTGCTAGTTGTGAGGGTTTGATTATTAAAACTTTGGATGAAGATGCTACTTATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCACTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGAAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACACCAATAGTGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGATGAGCGTTCTGCCAGTCTACGTACTAAAGTGATTCCCAAACCAAAGCCTTATTATCGATATGCTGAGACAATCAATCCTGACGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACCTGACCATTAGCCCTGTTCACCGTGCTGCAGTAGGCATAGTAGATTCAGATAAGGGAATATCTCTTCGGTTCCCTCGTCTTGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCATCATCTGAGATGGTAGCTGAAATGTATTCTGCCCAAAACCACAATCACCCAAACAATGAGGATGATGAAGAAGATTGA 2397 0.4322 MLSFRSCFSPSFFHPVRSLFRLEFSLTPPKTFALKPILFPTHNCGRIMSSRPSAFDALMSSARAAAKKKPQSSSPKKRKTQDSNSTQNPKLLKSTESTGQSSEPCNDTKCTDIKDSEKVQEPTKEDLSNGGLTASDSALAAKRTRVVGSHEKVTELKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLCLAFDMISDESGRIVMTDIVCNMLRTVMYSSPEDLVAVVYLSSNKIAPAHEGLELGIGDASIIKALAEACGRTETQIKNQYKEKGDLGLVAKASRSSQSMMRKPDPLTIKKVFNTFRLIAKESGKDSQDKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPSEIQSPLEEAAKIVKQVYSVLPLYDKIIPALLSGGVWKLPETCNFTPGVPVGPMLSKATKGVSEVLNKFQGIEFTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSVSSFVLDCELVAYDRVKRKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGEPLLQKNLKIRREHLYASFEEESGFLQFATAITSTDVEEIQKFLDAAVGASCEGLIIKTLDEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDTNSEEFQSICKIGTGFSEAMLDERSASLRTKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYSAQNHNHPNNEDDEED 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3729 798 Pfam DNA ligase N terminus 185 360 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco01g3729 798 FunFam DNA ligase 636 795 - -
Acco01g3729 798 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 66 794 - -
Acco01g3729 798 Gene3D - 636 797 IPR012340 -
Acco01g3729 798 NCBIfam ATP-dependent DNA ligase 243 782 IPR000977 GO:0003910|GO:0005524|GO:0071897
Acco01g3729 798 Gene3D - 437 635 - -
Acco01g3729 798 MobiDBLite consensus disorder prediction 765 798 - -
Acco01g3729 798 MobiDBLite consensus disorder prediction 61 135 - -
Acco01g3729 798 FunFam DNA ligase 162 429 - -
Acco01g3729 798 Gene3D DNA ligase/mRNA capping enzyme 456 581 - -
Acco01g3729 798 Pfam ATP dependent DNA ligase C terminal region 656 767 IPR012309 GO:0003910|GO:0006281|GO:0006310
Acco01g3729 798 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 167 418 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco01g3729 798 CDD Adenylation_DNA_ligase_I_Euk 416 634 - -
Acco01g3729 798 SUPERFAMILY Nucleic acid-binding proteins 639 785 IPR012340 -
Acco01g3729 798 MobiDBLite consensus disorder prediction 77 107 - -
Acco01g3729 798 ProSitePatterns ATP-dependent DNA ligase signature 2. 605 631 IPR016059 GO:0003909
Acco01g3729 798 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 451 459 IPR016059 GO:0003909
Acco01g3729 798 ProSiteProfiles ATP-dependent DNA ligase family profile. 533 669 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Acco01g3729 798 MobiDBLite consensus disorder prediction 108 124 - -
Acco01g3729 798 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 419 637 - -
Acco01g3729 798 Pfam ATP dependent DNA ligase domain 427 631 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Acco01g3729 798 Gene3D - 162 429 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco01g3729 798 CDD OBF_DNA_ligase_I 639 782 - -
Acco01g3729 798 FunFam DNA ligase 427 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3729 Acco-ChrAcco01 53428343 53435827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3729 43 798 Core DNA Replication Machinery Family AT1G08130 69.020 0.0 1087