Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3728 ATGGATGCTCACCAAGACCCTCTGATGCAAATTGACGACTTCCAGCTTCACGACTTCATCGACGACACCAATTTCGATCAGTTCATCAATTTGCTCCATGGGGAGAATGAAGACTCATTCTGTAACTTTGATTCTGACCTTATCAATGTCGGTTTAGCTGATACCCAGTTTCTTCCATTACCTGCAAACCCGTTTGAGTCTAATAATGCTGCTGTGAATGCTTATGATCCAAGCTCTACGCTTAGTTCCTTCTCATGTTTTGATGGATACGTGAGGGGAGGGAGAGGAGAAGAAGAGAATGATTCTTCCACTGCAACAACAAGCACCACCACTGAAACCACAACTCGTGATAACGCCAAACACAAGTCCAAAACTGATCGGTCCAAGACCCTGATTTCTGAAAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTAGCATATGTGCAGGAGATGCAAGAGAGGGCTAAGAAGCTTGAGGCTGAGATCAAAGGGCTTGAAGCATCTCTTCTAGCGCCAGAAAACGATCATCGGTCAGCTAAAATCTCCCTGAAGATTCAAAAGAACAAAATCAACTATCCAATCTGCAAGAAGATCATGCAGATGGACATGGTTCAAGTGGAGGAAAGAGGGTTTTATGTGAAATTGGTGTGTAATAAAGGAGAAGGAGTGGCTACCTCCCTGTACAGAGCTCTCGAGTCCCTAGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGATTTCTATTAACATTTACATTGAACGTGAAAGGTTGCGAGCCAGAAATAAACCAGCAAAATCTGAAGCTGTGGGTGGCAGGCGCTCTTCTAAATCAAGGCTTCGAATTTATTACATTTTTCCATGCTTGA 948 0.443 MDAHQDPLMQIDDFQLHDFIDDTNFDQFINLLHGENEDSFCNFDSDLINVGLADTQFLPLPANPFESNNAAVNAYDPSSTLSSFSCFDGYVRGGRGEEENDSSTATTSTTTETTTRDNAKHKSKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVAYVQEMQERAKKLEAEIKGLEASLLAPENDHRSAKISLKIQKNKINYPICKKIMQMDMVQVEERGFYVKLVCNKGEGVATSLYRALESLAGFNVQNSNLATVSDRFLLTFTLNVKGCEPEINQQNLKLWVAGALLNQGFEFITFFHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3728 315 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
Acco01g3728 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 193 IPR036638 GO:0046983
Acco01g3728 315 SMART finulus 131 180 IPR011598 GO:0046983
Acco01g3728 315 MobiDBLite consensus disorder prediction 95 136 - -
Acco01g3728 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Acco01g3728 315 Gene3D - 115 191 IPR036638 GO:0046983
Acco01g3728 315 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 121 191 - -
Acco01g3728 315 Coils Coil 164 191 - -
Acco01g3728 315 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 24 305 - -
Acco01g3728 315 MobiDBLite consensus disorder prediction 100 114 - -
Acco01g3728 315 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3728 Acco-ChrAcco01 53423697 53425178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3728 1 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.735 2.28e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g3728 HLH 2.8e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3728 01 53423697 53425178 Acco01g3728 01 53423697 53425178 ECH