Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3725 ATGGAAGGCACGGAGGAAGTGGAGTTTGTGGGCCCCTCTAATGAGCATGGCACCGTCTCGCACATCGCCAAGGGCAAGCGTACCAAGAGGAGGCCTTGTGCGGTCGCCGCCGCTGCCTTGACCTCTAGCTCGTCAAGCGTCTCCGGGGAACACCTCAGCGCCGGTGCAGATTACGCCTCCATTTCCTCCACCACAACAACCACTACTCATAATTATGACGACAGCACTGAGGAAGAGGAAGACATGGCTCACTGTTTAATTCTCTTGGCTCAGAGCGGCGATTCCCACCATAATCTTAAGCACCGACCTCAATCTCATCAAGCCGCCAGAACGGAATCAGGAAGCAGCCGGAGATTCGCCGATATGTCCACCGTTACCGCCGGTGCCGCTAAAGTTGGTTTGTGTGTGTATGAGTGCAAAACGTGTAACCGAAGTTTTCCTTCGTTTCAAGCGTTGGGTGGGCACAGGGCCAGCCACAAAAGGCCTAAGCTGACGTTAGATGAGAAGAAACTGCCGCCGCAACTTATCAACAGTTATGAGATTGAAGAAGGTCAGATAAAAAGCAGCCCTCAGATTTCTCTTCAGTTAGGCAATAATAACATGAACGGGATCGTGTCATCAATCAACAAGGCCAAGATTCACGAGTGTTCCGTATGCGGGTCAGAATTCACGTCCGGGCAGGCATTGGGGGGCCACATGAGGAGGCATCGTGCATCCACCGCCACGGGTGCTTCTCAGGGAAGCTACGGTGAAATCGCCGACAACAGGACGGTGGCTGCGGTGGAGGTGAAGCCAAAAGTACTGGCTTTGGATCTGAACCTGCCAGCGCCGGAAGAGGATCATCAGAGGGAATCCAAGTTTGAGCTGACGGCGAAAGAAAAACCATTGATGCTGTCTGCTCCGACGTCTTTGGTGGGCTGCCATTATTAG 930 0.5333 MEGTEEVEFVGPSNEHGTVSHIAKGKRTKRRPCAVAAAALTSSSSSVSGEHLSAGADYASISSTTTTTTHNYDDSTEEEEDMAHCLILLAQSGDSHHNLKHRPQSHQAARTESGSSRRFADMSTVTAGAAKVGLCVYECKTCNRSFPSFQALGGHRASHKRPKLTLDEKKLPPQLINSYEIEEGQIKSSPQISLQLGNNNMNGIVSSINKAKIHECSVCGSEFTSGQALGGHMRRHRASTATGASQGSYGEIADNRTVAAVEVKPKVLALDLNLPAPEEDHQRESKFELTAKEKPLMLSAPTSLVGCHY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3725 309 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Acco01g3725 309 PANTHER ZINC FINGER PROTEIN ZAT5 62 294 - -
Acco01g3725 309 MobiDBLite consensus disorder prediction 1 26 - -
Acco01g3725 309 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Acco01g3725 309 Gene3D Classic Zinc Finger 134 236 - -
Acco01g3725 309 Pfam C2H2-type zinc finger 136 162 - -
Acco01g3725 309 Pfam C2H2-type zinc finger 214 238 - -
Acco01g3725 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Acco01g3725 309 SUPERFAMILY beta-beta-alpha zinc fingers 136 236 IPR036236 -
Acco01g3725 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 164 IPR013087 -
Acco01g3725 309 MobiDBLite consensus disorder prediction 96 117 - -
Acco01g3725 309 SMART c2h2final6 137 159 IPR013087 -
Acco01g3725 309 SMART c2h2final6 214 236 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3725 Acco-ChrAcco01 53397123 53398052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3725 20 309 C2H2 Transcription Factor Family AT2G28200 41.368 9.24e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g3725 zf-C2H2_6 1.4e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3725 01 53397123 53398052 Acco08g0353 08 2775470 2776228 CCT
Acco01g3725 01 53397123 53398052 Acco01g3725 01 53397123 53398052 ECH
Acco01g3725 01 53397123 53398052 Acco08g0353 08 2775470 2776228 ECH