Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3723 ATGATTTCAAGATCCACAGCTTCTGGTTTCCCAAATCCCTCACAACGCCAGTACAATTATATGGGTCCCCCTCCTGCTGCTACTGCTTCTGCTGATAATAATAATCTGGTTTCAGCCCGTGTCGAATCAGCTCCTCCTTCTCAGTCAACCTCGCTCATGTTCAATCTCTCCATCCTAAAAGACAAGCTAACACATGTGCAGACACTCGCGGGTATTCTTATCTCCTCGGATCAGAATCAGAACCTACAAGACTCAACAGCCTGCGCAACCTTAGCCAGCATGAATTCTATAATCCAGGAGTTCATAGTCACTGCCTCTTCCATGATGCTCACGTGCCAACACATGGTCCTTAATATCTCTCCCCCGCCAGGTACTACTCATTGCACTGAATCCAACTTTGGCAATAATTACACGAGCATGCATAATAATAGCACAAATAACATAGCTCAACACAGAGGGCAAGGTATATTCTCTAGTACCGATGATCAAACCCTGGAATGGTTCGGTGGTGAAAGCTATGATAATAACAATAATTGCACTAATAATAATAATAATCTAAAGGATGATGATCCGAGTGTTGGAATTAGTGAAACCAAGAGGGAAATGAGTCAAGGGGATGAAACCAATGAACCGAAGAATGAAGACATAATAGAATTGGATGCTGCTGATTTGTTGGCCAAGTACACGCATTACTGTCAAATTTGTGGGAAAGGGTTTAAAAGAGATGCGAATTTGAGGATGCATATGAGGGCTCATGGGGATGAGTACAAGACAAGTGCTGCTTTGAGCAATCCGATGAAGAATAGAGGCAAAGAATGTTCGATGAGCACGTTTAGGCCAAAGAAATACTCATGTCCACAACAAGGATGTAGGTGGAACCAGAAGCATGCAAAGTTTCAACCTTTGAAGTCAATGATATGTGTGAAGAATCACTACAAGAGGAGTCATTGTCCAAAGATGTACGTGTGCAAGAGGTGCAATGTGAAGCATTTCTCGGTGCTATCTGATCTGAGAACACATGAGAAGCACTGTGGAGATCTCAAGTGGCAGTGTTCGTGTGGTACGACGTTTTCAAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTTGGCCATGCTCCAGCTGTCACTGGCTTGTCATGTTCCGGAAAATTGGTGGAGCATCATCAGCAGGCGTTGCAATTGCAGGAAGATGTGTGTGACATGATAGATCAACAAGGTCTTCTTCTCCAAGCTTAG 1242 0.438 MISRSTASGFPNPSQRQYNYMGPPPAATASADNNNLVSARVESAPPSQSTSLMFNLSILKDKLTHVQTLAGILISSDQNQNLQDSTACATLASMNSIIQEFIVTASSMMLTCQHMVLNISPPPGTTHCTESNFGNNYTSMHNNSTNNIAQHRGQGIFSSTDDQTLEWFGGESYDNNNNCTNNNNNLKDDDPSVGISETKREMSQGDETNEPKNEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNRGKECSMSTFRPKKYSCPQQGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNVKHFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPAVTGLSCSGKLVEHHQQALQLQEDVCDMIDQQGLLLQA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3723 413 MobiDBLite consensus disorder prediction 1 21 - -
Acco01g3723 413 FunFam Zinc finger protein 574 229 254 - -
Acco01g3723 413 Pfam Zinc finger, C2H2 type 230 252 IPR013087 -
Acco01g3723 413 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 43 394 IPR044300 GO:0010044|GO:0010447
Acco01g3723 413 MobiDBLite consensus disorder prediction 1 31 - -
Acco01g3723 413 MobiDBLite consensus disorder prediction 178 213 - -
Acco01g3723 413 SMART c2h2final6 283 316 IPR013087 -
Acco01g3723 413 SMART c2h2final6 230 252 IPR013087 -
Acco01g3723 413 SMART c2h2final6 321 343 IPR013087 -
Acco01g3723 413 MobiDBLite consensus disorder prediction 192 213 - -
Acco01g3723 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Acco01g3723 413 Gene3D Classic Zinc Finger 226 254 - -
Acco01g3723 413 SUPERFAMILY beta-beta-alpha zinc fingers 228 255 IPR036236 -
Acco01g3723 413 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3723 Acco-ChrAcco01 53383292 53384533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3723 49 376 C2H2 Transcription Factor Family AT5G22890 49.570 1.90e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g3723 zf-C2H2 0.00011 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3723 01 53383292 53384533 Acco01g3723 01 53383292 53384533 ECH