Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3717 ATGGCTATTGCTGGACTACATAATCTGTCTGTGCTTGACTCTTCTTTTCTTAGGGATTCCCATTCTCAATCACCTAGGAGGCGAGGAGATGGGGGGAGTGGAAGCACTCGATCGGCCTCAATCTTGCAAATGTGGCGAGAGATTGAGGATGAGCATGTGTTAGGCCAAGTCCAAGGAAGACCTGGTGATGGTTTACTTCAGCAAAGGAGTGATGAGTTCGTCACTGACCTCTCACAGGCAAGTATGCCAAGTAGCCATGAGACAGGAGAGAGGCATGCGGTAGAAGATTCAATTTTGGGTGAGAATGATTGTGAAACATGGTCACAGTCACAGAGTCAGCATGAATCTCCTGATGAGCAGGAGGAATTAAACCATTCTGGTTGTGATAATTCCTCTGATCTTGGAGAAGTTGAAAGGGAAAGGGTGAGGCAAATTTTCAGGGAATGGATGAAAAGTGGTGACGGGGATCAAGCCACAAGTATTCCCCAAGGTAATAGCAGTTCAAGATCAGAATGGCTCGGTGAAACTGAGCAGGAGAGGGTGAGAATCATAAGGGAGTGGGTACAACTGAGTAGCCAGCAGAGAGTCATTTCTACTGGGGACAACAGGGAAGAACAATCAGCTGAAGTTGGTACCCAAATAGATCGAATTCGTGATGGGTTTGCTGTTAATCAGAATGAGGGTCAAACTGAGCATGTGCGAAGGGGTATTCGTAAATTATGTGGCAGACAGGTTCTACTTGATATGGTTAAGAAGGCTGAGAAGGAAAGACGAAGAGAAGTTCAGGAATTGTTGGAGCATAGAGCTGTATCTCATTTCCCACATCGCAACCGCATTCAGGCATTGCTCAGGGGTAGGTTCTTGAGAAATGACAGGTCAATTGATGCTAACCGGTGCAGTTCCATAGCTGAAAGTGAATTGGGCTTGCTGAGGCAAAAACAAACTGTGTCAGGTCTAAGGGAAGGGTTTTTCTCTGGGAAGGACTGTTCTGGTGGCAGTCAAGCAACTTCCACTCTATCAGATACCTCATCTAACAGTGGCATTGATAATAATTTAAATGAACAAATTGACTCCAGCAGTTTACATTCAGTCTCAATTGTACATTTTGAACAGTCTGAACCTACTGTTGGAGATAGTGTAGTAGTTGGGATCTTAGATGGTGAGAATTTTTCACAAGAAACCATTATGGAAAATTTAGATTGCCAAGACTCCGCTGCTCATATAGAAGGAAGGTCATCACAGCTTTTGGGAAATGAGTCAAGAGATTGCCAATCATCATCCAGTGTTGGGACGGAAAGAAGAGATGATAGTGGGCGATATGTTGTTGGGATGACAGTTGAAGATACCACTAATGGACTTATGCAACAAAATTCTCAAATTGAAGTTACAGGACATAGCGATATGCTGGGATCTAGTGAGGTATATTCAGAAGAATTTCAGCTGAGTGTTACAAGAGACGATGATACTGGTTCATCAACTGATAGTGATGTTTTGGAAGCCACTACGGAAGATAATGAAAATAGGTATGGATCTACTGCTCTGGAAGAACAACAGCAGGAAGAACTTGTTGAAAATGAAGGAAGTGATGGGCACCAGAGAAATGGGGCAGAGGAAAGACTGGGTGATAATCAACCCCATGATACAGCCAGTGAGTGGCCTCAAGACATTTTGAGCAATGAAGATGGGGAAAACTCTCATCTACCGGAAGCCCCAGAAATGTGGCAAGAAGACGGTGGCTTTCAGGAGGCCGTGGAAAATTGGTTGGGTGGACCTTCTGATCCTGAAGTTGCTCCAGTTGGCAGAATTCATGGCTTTTATTTTCCAGATGATGACAATGTGAACAGCGTGGAACTCAGGGAACTGCTAAATAGGAGGAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAGTGGGAGCTGCAAGAAATGAGACCTTCTTCTGCCTCAGTTGAACAGGGCCTGGAGCAGCCCCGTAGGGATCAGATTGTTGGTCAGGATGATACTATCAACAGTCCACTTGACCGGCCCTCATCACCAACACCTCCTCAACCTCTCTGGGAACGACATTCACGTAATGACAATTGGTCACGAGCTGACATGAATAATCAGCGCCTAGGAATTGGGCATTCATTTTCTTTGGAGTGGGAGATTATCAATGACTTGAGAATTGACATGGCTAGGCTACAGCAAAGAATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAACTTGAGTTGCAGCGCTCAATAAGACAGGAGGTGTCTGCAGCACTAAATCGCTCAGCTGGTTCATCAGATATGCATGATCATGATTCTCCTGATGACAAGTCTAAATGGGAATGTGTGAGAAAAGGACTGTGCTGTATATGTTGCGAGAGCAATATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCACATGTTCAAAATGTGCCAATGAGTTGTTCCAAAGTAGGAGAAAGTGTCCAATGTGTCAAGCGCCCGTTGTGGAGGTGATACGTGCTTATTCCATTCTATAA 2586 0.4459 MAIAGLHNLSVLDSSFLRDSHSQSPRRRGDGGSGSTRSASILQMWREIEDEHVLGQVQGRPGDGLLQQRSDEFVTDLSQASMPSSHETGERHAVEDSILGENDCETWSQSQSQHESPDEQEELNHSGCDNSSDLGEVERERVRQIFREWMKSGDGDQATSIPQGNSSSRSEWLGETEQERVRIIREWVQLSSQQRVISTGDNREEQSAEVGTQIDRIRDGFAVNQNEGQTEHVRRGIRKLCGRQVLLDMVKKAEKERRREVQELLEHRAVSHFPHRNRIQALLRGRFLRNDRSIDANRCSSIAESELGLLRQKQTVSGLREGFFSGKDCSGGSQATSTLSDTSSNSGIDNNLNEQIDSSSLHSVSIVHFEQSEPTVGDSVVVGILDGENFSQETIMENLDCQDSAAHIEGRSSQLLGNESRDCQSSSSVGTERRDDSGRYVVGMTVEDTTNGLMQQNSQIEVTGHSDMLGSSEVYSEEFQLSVTRDDDTGSSTDSDVLEATTEDNENRYGSTALEEQQQEELVENEGSDGHQRNGAEERLGDNQPHDTASEWPQDILSNEDGENSHLPEAPEMWQEDGGFQEAVENWLGGPSDPEVAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQEMRPSSASVEQGLEQPRRDQIVGQDDTINSPLDRPSSPTPPQPLWERHSRNDNWSRADMNNQRLGIGHSFSLEWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSDMHDHDSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCQAPVVEVIRAYSIL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3717 861 MobiDBLite consensus disorder prediction 482 571 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 329 354 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 411 427 - -
Acco01g3717 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 859 IPR013083 -
Acco01g3717 861 Pfam Zinc finger, C3HC4 type (RING finger) 806 853 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 524 545 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 104 136 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 662 712 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 547 561 - -
Acco01g3717 861 CDD mRING-HC-C3HC5_NEU1 809 858 - -
Acco01g3717 861 Coils Coil 243 270 - -
Acco01g3717 861 ProSiteProfiles Zinc finger RING-type profile. 809 848 IPR001841 -
Acco01g3717 861 MobiDBLite consensus disorder prediction 27 41 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 156 172 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 18 41 - -
Acco01g3717 861 Coils Coil 737 764 - -
Acco01g3717 861 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 861 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 148 175 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 411 438 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 115 136 - -
Acco01g3717 861 SUPERFAMILY RING/U-box 808 854 - -
Acco01g3717 861 MobiDBLite consensus disorder prediction 494 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3717 Acco-ChrAcco01 53351555 53355183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3717 809 855 C3H Transcription Factor Family AT3G06140 40.426 4.07e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3717 01 53351555 53355183 Acco08g0359 08 2810678 2815394 CCT
Acco01g3717 01 53351555 53355183 Acco01g3717 01 53351555 53355183 ECH