Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3680 ATGAACGGTGAAAGCCGAAGATGGGACCGCAAAGACTCCCGTATAGCCAAGAAGCAGAAGCTAATCCGCAGTGCCGAAGAAGAACTCGAGGCTAAATTAGGGTTCGATCTTTTCTCAGAGGGCGATAAACGACTTGGATGGTTGCTAAATTTTTCATCTTCATCTTGGGAGGATGAAGATACACACAAAGTCTATAGTTGTGTGGATCTTTATTTTGTTTCTCAGGATGGTTCTATGTTCAAGTCAAAGTACATATTTCAGCCTTATTTCTATGTGGCTACAAAGGATAAAATGGAGATGGAAGTTGAAGCATATCTGAGACGGCGTTATGAAAATCAGATTGCAGATATTGAAATTAAAGAGAAGGAAGACCTTGATCTTAAAAATCATTTGTCTGGGTTACAAAAATCTTATTTAAAGCTATCCTTTGACACTGTGCAACAATTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATCAGGCAAAATCTGATGCAGCAGAAGCTTATGAATCCATATTAACTGGAAGAAGGGAGCAAAAATTTCAAGATTTTCTAGATTATATTATTGATCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGATAATGATATTCGATCTGGCCAATGGTATGATGTTAGTGTGTCCAATACTGGGGTTACACTCGAGAAGAGGACCGATCTTCTGCAGCGTGCTGAAGTCCGTATTTGTGCTTTTGATATAGAGACCACAAAACTTCCATTGAAGTTCCCTGATGCTGACTACGACTTAATTATGATGATTTCATACATGGTAGATGGACAAGGGTATTTGATCATAAATAGAGAGTGTGTTGGGGACGACATAGAGGATTTGGAGTACACTCCAAAACCAGAGTTTGAAGGATGTTTTAAGGTGACGAATGTTCAAAATGAGGTAATGTTTGTTGTCTTTTTGCTAAGAATTTGGGAGTACTTGCAGGTGGAACTTCTTAGATTGTGGTTTTCTCACATGCAAGAGGTGAAGCCAAGTATATATGTTACATATAACGGTGATTTCTTTGATTGGCCATTTGTGGAAAGAAGGGCTGCTCATCACGGGTTCAAAATGCGTGATGAGTTGGGTTTTCAATGTGACGATAACCAAGGGGAATGTCGAGCTAAATTTGCTTGCCATCTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTTCCTCAGGGGAGTCAAGGCCTGAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCCCTAGAGGTGAACCCTGAGGACATGGTTCGCTTTGCTAAGGAAAAACCTCAGATGATGGCCTCTTACTCCGTTTCTGATGCTGTGGCAACTTATTACTTGTATAAAACTTATGTTCATCCCTTCATTTTTTCTCTTGCAACAATTATACCCATGTCACCGGATGAGGTTTTGCGTAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTCATGGTTCAGGCATACAAGGCTAATGTGATCTGCCCCAACAAACACCTGTCTGATCCTGAGAAATTTTACAGCAATCACCTTCTTGAGAGCGAGACATACATAGGTGGCCATGTGGAATGCCTTGAAAGTGGTGTTTTTAGATCTGATCTTCCAACTAGTTTTACCCTTGAACCTTCAGCATACGAGCAATTGATCAACAACCTTGATCGAGACCTGCAATATGCTGTAAGAGTAGAGGGTAAGATGGACTTGGATTCTATCTCTAACTATGATGACGTTAAGAATGCTATCATGGAGAAGCTTATAAAATTGCGAGACAAGCCAATATGTGAAGAATGCCCCCTCATTTATCATCTGGATGTTGCTGCTATGTATCCAAACATAATATTAACAAACCGGCTTCAGCCGCCTTCAATAGTTACAGAGGAGGTCTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACTTGCCTTCGAAAACTTGAGTGGGTTTGGCGTGGAGAAATTTTCATGGCAAAGAAAAGTGATTATTATCATTTAAAGAAGCAGATTGAGTCAGAGTTTGTTGAAAGTACTGATAGGCAGTCGTCTACATCATTTCTTGACCTGCCCAAGTCAGAGCAGCAATCCAGGCTAAAAGAACGTCTAAAGAAATACTGCCAGAAGGCATACAAACGAGTACTTGATAAACCAGTAACTGAACTTCGTGAGGCAGGGATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGCTTTCGTGATAGAAGATATGAATACAAAGGTCTTAATAAGGTTTGGAAGGGAAAGTTGTCAGAAGCCAAGGCCAGTGGAAATTCCATTAAGATCCAAGAAGCACAAGACATGGTCGTGCTTTATGATTCATTGCAACTTGCGCACAAGTGCATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGGGCAAGATGGTACTCCATGGAAATGGCCGGAGTTGTTACTTATACTGGTGCAAAAATCATTCAGAATGCCCGCTTGCTTGTTGAGAAAATAGGAAAGCCACTTGAATTAGACACGGATGGTATTTGGTGTGCACTTCCTGGATCTTTTCCGGAAAATTTCACTTTTAAAACAAAAGACTTAAAGAGGAAATTGACTATTTCATACCCTTGTGTCATGCTTAACGTTGATGTGGCAAGGAACAATACAAATGATCAGTATCAGACACTCATTGATCCAGTTAGGAAAACTTACGCAACGCACAGCGAATGTTCTATTGAATTTGAAGTTGATGGACCATACAAAGCAATGATCCTTCCAGCTTCCAAAGAAGAAGGAATTCTAATTAAGAAGCGGTATGCTGTTTTTAATGATGATGGAACACTTGCAGAGCTCAAAGGTTTTGAGATAAAGCGGAGAGGCGAACTAAAGCTAATAAAAGTTTTCCAGGCAGAGCTTTTTGACAAGTTTCTCCACGGGTCAACCATAGAGGAATGTTATTCAGCTGTCGCAACTGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAGGGAAGGGATATCGCAGATAGCGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACGGCTAGACGGCTTGCTGACTTTCTTGGTGATGCAATGGTCAAAGATAAAGGCCTACGCTGTCAGTACATAGTCGCATGTGAACCTAAGGGAACACCTGTAAGCGCACGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCAGCTGATGTTGGCATTCGATCCATAGTTGATTGGTCCTATTATAGGCAACGGCTGAGCTCTGCAATTCAAAAAATCATCACCATTCCTGCTGCAATGCAGAAGGTTGCAAATCCTGTCCCTAGTGTGGTTCATCCTGATTGGTTGCACAAAAAGGTTCGGGAGAAGCAGGACAAATTTCGCCAACGAAAATTAGTGGATGTCTTTAATAGCATGAACAGGGATGAACTCTCTAAAAAGCAAAGTAATTCTGATAATGTCTGCCATGTTATGAATGAAGAGGCTATTAATGACTTGGAGGATTTTGGTAACAAGACCAGGAACAATATTACTGGACCTAGACCAATTATACGACATTATGAAGCTAATAATAAACAGCACTCAGTCAAGCCTTATGGCAAAGAAGCTTCTGAGCAAAAACATAGTGATCATGGTAATCAGCGTCAGCCGCTAGTACAGTTAGGACGCAATGAATTGTTATCTGAAAATGTTGACAAAACAGTAGATTATCAAGGATGGCTCCAGACGAAGAAGAGAAAGTGGAAAGATATAATAGCTAGAAGAAAGAAGCAAAGATTGGGGAATTCAAAGAAATCTGACACTGCTAATAGCACTCTTGAAAGACTGAGAAATAAGATGGATCATGGAGCTAAGGGAAGAAGTAATGTTGATTCATATTTCAGGAGGCACGAGGTAGTACTGACGCGGTCCCATTGGCAGATAATACAACTAATCCACAGTTCACAGATGGGCCAATTTTTTGCTTGGGTTGTTGTCGATGGGGTTCTGCTTAAGATTCCAGTTTCTGTTCCTAGGGTCTTTTACCTCAATTCTAGGTCGCCAATTACCGAACAGTTTATGGGTAAACGTGTCAACAAGACTCTTCCACATGGAAGGCATAGTTATAACCTGTACGAGGTTACAATTAATGAAGTTCAATTTAAAGAAACAAGCAGAAAGCTTGCAGCTCTTCTGGCAGATCCTGACATTGAGGGAATATATGAAACAAAAGTGCCATTGGAATTTAATGCCATAGTCCAGCTTGGCTGTGTATGCAAGGTGGACAAAACTGCTAAAAAACGCAGTCTTCAGGAACCTTGGAATCTGAGTGAGTTGCACATGAAGACCACTACAGAATGTTCTTATCTTGAACAATCCATATCCTTCTTATACTTGTATCATAGCATCTCTGAGGGGCGGGCTATATATGTTGGCTATTTTCCTGCATCAAAAGCGATATCTGTTGTGGTAGTTAACCCGTATCAAAACAAGGACTTATCCCCGGTATTTCTTGAAAGACAATTCCGTGATGCTTGTGAAGCTTTGTCTATTGAGACACCTCCCAGAAATGGTATTAGATTTAAGGTGGACTACGTTTTGCATGTCAAGGATGCTGAAACGATGATGCAAAGAGTGATAAATGATCAAAGGAATGAACATCATGGGCCTATGGTTGCTGTCATTGAATGTCCAAATCCGCAACTAATGAAATTGGCTATTCGAGCTCTAGATGATTTTCCATGCCTAAACATTCCTTCTAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAGTTGCTGCAAAAACTGGAATGCATCGCTGTGCTGCTTCAGTCCAGTGGTTAAATGAGAGACTCTCTCTCTCAAGATATGCTCATGTGCCTTTAGGGAATTTCGAACTTGACTGGCTCATATTTGCCGCAGATATATTCTTGTCTAGAGCACTGAGGGATAATCAGCAGGTGCTTTGGATATCTGATGATGGCCTTCCTGATTTAGGCGGAATTAATGAAGAAGAGACATGTTTTGCTGATGAGGTCCACCAACCTGTTCTTACGTATCCTGGAGCTTACAGAAAAGTTACAGTAGAGCTAAAGATTCACCACCTGGCCGTGGATGCTCTTCTAAAAAGCAACCAAGTCAATGAGTTGGAAGGAGGTGCTTTGTTAGGATTTGATCATGACATAAACTCTGGACCATTTGCCGTAAATGATCAGAATGGCATTGATGAGGCCACCTCATGTGCACGAGCTTTTCGAGTCCTAAAGCAGTTAATCCAACGGTGCCTTGCAGATGCAGTTACATCTGGAAATGTATATGCTGATGCAATATTGCAACATCTATATCGATGGCTATGCAGCCCTCAATCAAAACTTCATGATCCAGCTCTTCACCAACTACTCCACAAGGTCATGCAGAAGGTTTTTGCATTGTTGTTGGTGGAGCTCCGTAAATTGGGTGCATCAATTGTTTTTGCAAACTTCTCAAAAATAATTATAGACACGGGCAAATTTGATCTGTCTGCAGCCAAAGCTTACTGTGATAGTTTGTTACGAACTCTACAATCTAGAGATTTATTTGAATGGATTGAACTTGAACCGCTTCAGTTTTGGAACTCATTGCTATTTATGGATCAGTATAACTATGGTGGAATACCAGCAAAATTTGAAGAAGCTATGAATGGTGAATCTCAAGTTGACATTATATCGAGTTGGAACATTGCCGAATACTTACCAAAGAAAATCCAGGACCACTTTGTTTTCATTGTTTCTCAATTCATGTACATTCCCTGGAACTATGCACAAAGACAAGCTGCAATGCCAGCTTCATCACAAGATGGTGACTCCTGCACTCCATCAATCACTATTGGAGCTGCAGAGAAATTTGAATCACATGTAACAGAGTATATTAAAGGGCAGATCAGCTCTTATTTCACAGACAAACTTCTGGGAATTGTTGGCGATATTATGCATCATATGAAGGAGATAAGACTAGAAAAAGACCAGAACGTATCATCTGGCAATCCTCAAGTTGCAGCTGATTTCAACAAAGGGGATGCAGCCTTGGAATTTATCAAGCATGTTTGTGCAGTCCTTGCCCTGGACCAGAGTGTGCAGCATGATGTTCTGGTCATGAGAAAGAATTTGTTGAGATTTGTTCGTGTGAGGGAGTTTGCACCAGAAGCTGAGTTTCGGGATCAGACTCATTCGTTCATATTACCTAATGTCATCTGCAGCTACTGCAACGATTGCAGAGATTTGGATTTGTGCCGGGACTCAGCTTTATTAAGTCAAGAGTGGCAATGTGGCGTGCCGCAGTGTGGGCAGCCATATGATCGTGAGGTGATGGAAAATGCACTCCTTCAGATTGTACGACAGAGAGAACGACTATACCACTTGCAAGATCTGGTGTGTGTCAGATGTTACCAGGTCAAAGCTGCTCATTTAGCTGAGCAATGTGCTTGTGCCGGATCATACAAGTGCAAGGAAGATAGAACTGAATTTCGCAATAAGATGCAGGTTTTCTACAACATTGCAGTTCGCCAAAAATTCCAACTCCTTCAAGAATGCACCTCATGGATTCTAGAATTGAGATAG 6690 0.4109 MNGESRRWDRKDSRIAKKQKLIRSAEEELEAKLGFDLFSEGDKRLGWLLNFSSSSWEDEDTHKVYSCVDLYFVSQDGSMFKSKYIFQPYFYVATKDKMEMEVEAYLRRRYENQIADIEIKEKEDLDLKNHLSGLQKSYLKLSFDTVQQLMNVKSDLMHVVERNQAKSDAAEAYESILTGRREQKFQDFLDYIIDLREYDVPYHVRFAIDNDIRSGQWYDVSVSNTGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEVMFVVFLLRIWEYLQVELLRLWFSHMQEVKPSIYVTYNGDFFDWPFVERRAAHHGFKMRDELGFQCDDNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYKTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHLSDPEKFYSNHLLESETYIGGHVECLESGVFRSDLPTSFTLEPSAYEQLINNLDRDLQYAVRVEGKMDLDSISNYDDVKNAIMEKLIKLRDKPICEECPLIYHLDVAAMYPNIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGEIFMAKKSDYYHLKKQIESEFVESTDRQSSTSFLDLPKSEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDLKRKLTISYPCVMLNVDVARNNTNDQYQTLIDPVRKTYATHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVATVANRWLDLLDNQGRDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDAMVKDKGLRCQYIVACEPKGTPVSARAVPVAIFETDAEVMKFYVRKWCKVSADVGIRSIVDWSYYRQRLSSAIQKIITIPAAMQKVANPVPSVVHPDWLHKKVREKQDKFRQRKLVDVFNSMNRDELSKKQSNSDNVCHVMNEEAINDLEDFGNKTRNNITGPRPIIRHYEANNKQHSVKPYGKEASEQKHSDHGNQRQPLVQLGRNELLSENVDKTVDYQGWLQTKKRKWKDIIARRKKQRLGNSKKSDTANSTLERLRNKMDHGAKGRSNVDSYFRRHEVVLTRSHWQIIQLIHSSQMGQFFAWVVVDGVLLKIPVSVPRVFYLNSRSPITEQFMGKRVNKTLPHGRHSYNLYEVTINEVQFKETSRKLAALLADPDIEGIYETKVPLEFNAIVQLGCVCKVDKTAKKRSLQEPWNLSELHMKTTTECSYLEQSISFLYLYHSISEGRAIYVGYFPASKAISVVVVNPYQNKDLSPVFLERQFRDACEALSIETPPRNGIRFKVDYVLHVKDAETMMQRVINDQRNEHHGPMVAVIECPNPQLMKLAIRALDDFPCLNIPSNARDSQYQILGWQQVAAKTGMHRCAASVQWLNERLSLSRYAHVPLGNFELDWLIFAADIFLSRALRDNQQVLWISDDGLPDLGGINEEETCFADEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQVNELEGGALLGFDHDINSGPFAVNDQNGIDEATSCARAFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLVELRKLGASIVFANFSKIIIDTGKFDLSAAKAYCDSLLRTLQSRDLFEWIELEPLQFWNSLLFMDQYNYGGIPAKFEEAMNGESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAQRQAAMPASSQDGDSCTPSITIGAAEKFESHVTEYIKGQISSYFTDKLLGIVGDIMHHMKEIRLEKDQNVSSGNPQVAADFNKGDAALEFIKHVCAVLALDQSVQHDVLVMRKNLLRFVRVREFAPEAEFRDQTHSFILPNVICSYCNDCRDLDLCRDSALLSQEWQCGVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCVRCYQVKAAHLAEQCACAGSYKCKEDRTEFRNKMQVFYNIAVRQKFQLLQECTSWILELR 2229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3680 2229 Gene3D - 956 1140 IPR042087 -
Acco01g3680 2229 FunFam DNA polymerase epsilon catalytic subunit 956 1140 - -
Acco01g3680 2229 CDD DNA_polB_epsilon_exo 240 459 - -
Acco01g3680 2229 Gene3D Palm domain of DNA polymerase 767 952 IPR023211 -
Acco01g3680 2229 FunFam DNA polymerase epsilon catalytic subunit 240 483 - -
Acco01g3680 2229 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 17 2227 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Acco01g3680 2229 SMART DUF1744_2 1532 1916 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Acco01g3680 2229 SUPERFAMILY Ribonuclease H-like 57 482 IPR012337 -
Acco01g3680 2229 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Acco01g3680 2229 Pfam DNA polymerase family B 771 1085 IPR006134 GO:0000166|GO:0003677
Acco01g3680 2229 SMART polmehr3 239 857 IPR006172 GO:0000166|GO:0003676|GO:0003887
Acco01g3680 2229 MobiDBLite consensus disorder prediction 1225 1253 - -
Acco01g3680 2229 Pfam DNA polymerase family B, exonuclease domain 73 415 IPR006133 -
Acco01g3680 2229 Gene3D DNA Polymerase, chain B, domain 1 51 231 - -
Acco01g3680 2229 Pfam Domain of unknown function (DUF1744) 1548 1916 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Acco01g3680 2229 SUPERFAMILY DNA/RNA polymerases 501 1130 IPR043502 -
Acco01g3680 2229 Gene3D - 238 483 IPR036397 GO:0003676
Acco01g3680 2229 MobiDBLite consensus disorder prediction 1233 1247 - -
Acco01g3680 2229 FunFam DNA polymerase epsilon catalytic subunit 771 952 - -
Acco01g3680 2229 CDD POLBc_epsilon 518 1137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3680 1 2119 Core DNA Replication Machinery Family AT1G08260 71.012 0.0 3078