Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3666 ATGATCGATCTGAAGATGGATTTGAGGGAATATTACAAGCGTGAAGAAGACAAGAGTGTGAACTTTGAAGCTCCAACTTTCTTTGAATGGCTCAAACCTACTCCTTCATCTTCTGTGATTCATGATCATCATCAAGAGGCTATTCAGTTTTTGCCAATTGTAACTGAAAAGCCCCCAACTGAACACAGTGTTATTGGAGCAATTAAACAAGAGAAGAAGGACAACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAATTACACACAAGGTTTTCAGGCTGATGGTGATCAGAAGAATAATAAGAAAGATTCTGATTTGAAGGAAGAAGAAGAAGAAGTGGTGAATAAGAGAAGCTTTCAAGGGTTCTCTAAGAATTCTTACACAGAGAGAAGGTTCTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCCATATGCAGCAAGACCTTCAGTAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGTTCAGAGTATAGAAAAGGAGCAGAATCACTGAAAGGAACACAACCAGCAGCAATGTTGAGGCTGCCATGTTATTGTTGTGCACAAGGCTGCAAGAACAATATCAACCATCCAAGAGGGAAGCCTCTTAAGGACTTCAGAACCCTCCAAACCCACTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGTGCCAAAACCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGGTCTGGTATTGCACTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCTCTTTCTCATCAACATCATCACGATGATGGCCACAAGCAATATGATTCCATCACTAGTACCACTGCCTCTCAAGAATCTTAA 945 0.4212 MIDLKMDLREYYKREEDKSVNFEAPTFFEWLKPTPSSSVIHDHHQEAIQFLPIVTEKPPTEHSVIGAIKQEKKDNVDEQVTVALHIGLPNYTQGFQADGDQKNNKKDSDLKEEEEEVVNKRSFQGFSKNSYTERRFWIPTPAQILVGPMQFTCSICSKTFSRYNNLQMHMWGHGSEYRKGAESLKGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHFKRKHGSKPFVCRKCAKTFAVKGDWRTHEKNCGKVWYCTCGSDFKHKRSLKDHIRSFGKGHSPLSHQHHHDDGHKQYDSITSTTASQES 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3666 314 FunFam Zinc finger protein WIP2 204 286 - -
Acco01g3666 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Acco01g3666 314 MobiDBLite consensus disorder prediction 94 116 - -
Acco01g3666 314 SMART c2h2final6 235 255 IPR013087 -
Acco01g3666 314 SMART c2h2final6 198 230 IPR013087 -
Acco01g3666 314 SMART c2h2final6 151 173 IPR013087 -
Acco01g3666 314 SUPERFAMILY beta-beta-alpha zinc fingers 221 255 IPR036236 -
Acco01g3666 314 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Acco01g3666 314 Gene3D Classic Zinc Finger 212 287 - -
Acco01g3666 314 Gene3D Classic Zinc Finger 150 173 - -
Acco01g3666 314 Pfam Zinc finger, C2H2 type 151 170 IPR013087 -
Acco01g3666 314 FunFam Zinc finger 45-like 150 174 - -
Acco01g3666 314 MobiDBLite consensus disorder prediction 100 116 - -
Acco01g3666 314 MobiDBLite consensus disorder prediction 280 314 - -
Acco01g3666 314 PANTHER ZINC FINGER PROTEIN WIP2 39 304 IPR043584 GO:0003700|GO:0010468
Acco01g3666 314 MobiDBLite consensus disorder prediction 280 302 - -
Acco01g3666 314 SUPERFAMILY beta-beta-alpha zinc fingers 137 174 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3666 Acco-ChrAcco01 52924464 52926446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3666 16 288 C2H2 Transcription Factor Family AT1G08290 56.563 6.61e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g3666 zf-C2H2_6 3.5e-05 CL0361