Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3654 ATGCCACGAGGAAAGGCAAATTCTTCATCAGTTGATAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATTTTGATGAAGAAAATGATCCTGAGGAAACAATGGAAGAAGAAAGTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTTGAAGAGATAGAAGTGGAGGTGGATGAAGAGGAGGAAGAGGAAGAGGTTGAAGAAGAAGAAGATGATGATGATGTTGATCATGCCGATGACACTGATGCCATGCAAAACATTAGCGGTGATGAGGCAAAGGTGGAAGATGAGGATGAGAAGAAAAAGCATGCAGAACTTCTCTCTCTTCCTCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCGTCAGGTGAGGATTTGAAGGCTTTCTGTGAATCTATTGGTGAAGTTATGGAGGTGAGGGTTATGAAAGGAAAAGATTCTGCAGAAAACAAGGGCTTTGGTTTTGTGACCTTCAAAAGTGTGGAATTGGCATCTAAAGCCATTGAAGAGCTACATAATAAACAATTTAAGGGTAAAAAGATAAAATGTTCATCGTCCCAAGCAAAGCACCGACTTTTCATTGGTAATGTTCCGAGAAGCTGGGGAGATGAGGATCTGAGGAAAGTTGTAACTTTGATTGGGCCGGGAGTTACAACTGTGGAACTAGTCAAGGATATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATCCAAAATTCAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCTTCTGCTACATCTCAGGTGAGGGCAGTATACGTCAAGAACTTACCTAAGGATGTAACTGGAGATGAACTAAAGAAACTTTTTGAGCACCATGGGAAGATTTCAAAGGTGGTTCTGCCACCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCCCAGGTTGATAAGTCTGGAGGATCAAATACACAGAAGTCAGGATTGCTTCCTGGCTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGGCCTAGGCGCTGGATATGGTGCTGCAGGCCTTGCGCAGGTGGCACATCCCATGATACATGGAAGGGGTCCAGCTCCATCTGGAATGGCCATGATGCCCATGCTTTTGCCTGATGGGCGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCCGCTTCAAATCATAGAGGCGGCAGGAATGGAGGGAGTGGCAGCAGGAACTTTGGCAGTTCAAGCAAGGGAAGGAACAATAATGCCAGTGGCCAAGGGCGCAGATATCGTCCATATTAG 1491 0.44 MPRGKANSSSVDKPSEPEKPTESDEKVDFDEENDPEETMEEESEYEEVEEEEEVEEIEVEVDEEEEEEEVEEEEDDDDVDHADDTDAMQNISGDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASGEDLKAFCESIGEVMEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELHNKQFKGKKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVTLIGPGVTTVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDPKFKLGDNAPTVSWADPKNADSSATSQVRAVYVKNLPKDVTGDELKKLFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELNGQVLECSLAKPQVDKSGGSNTQKSGLLPGYPPHVGYNLIGGAYGGLGAGYGAAGLAQVAHPMIHGRGPAPSGMAMMPMLLPDGRIGYVLQQPGMQPQTPASNHRGGRNGGSGSRNFGSSSKGRNNNASGQGRRYRPY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3654 496 Coils Coil 38 76 - -
Acco01g3654 496 MobiDBLite consensus disorder prediction 450 490 - -
Acco01g3654 496 SMART rrm2_1 119 192 IPR003954 GO:0003676
Acco01g3654 496 SMART rrm2_1 293 366 IPR003954 GO:0003676
Acco01g3654 496 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 199 279 - -
Acco01g3654 496 Gene3D - 199 279 IPR012677 -
Acco01g3654 496 Gene3D - 4 198 IPR012677 -
Acco01g3654 496 Gene3D - 280 385 IPR012677 -
Acco01g3654 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 280 IPR000504 GO:0003723
Acco01g3654 496 MobiDBLite consensus disorder prediction 448 496 - -
Acco01g3654 496 MobiDBLite consensus disorder prediction 27 83 - -
Acco01g3654 496 SUPERFAMILY RNA-binding domain, RBD 284 394 IPR035979 GO:0003676
Acco01g3654 496 MobiDBLite consensus disorder prediction 1 105 - -
Acco01g3654 496 FunFam RNA recognition motif-containing protein 21 198 - -
Acco01g3654 496 SUPERFAMILY RNA-binding domain, RBD 115 284 IPR035979 GO:0003676
Acco01g3654 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Acco01g3654 496 SMART rrm1_1 293 366 IPR000504 GO:0003723
Acco01g3654 496 SMART rrm1_1 199 276 IPR000504 GO:0003723
Acco01g3654 496 SMART rrm1_1 119 192 IPR000504 GO:0003723
Acco01g3654 496 CDD RRM_SF 120 192 - -
Acco01g3654 496 MobiDBLite consensus disorder prediction 84 105 - -
Acco01g3654 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 363 IPR000504 GO:0003723
Acco01g3654 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 261 IPR000504 GO:0003723
Acco01g3654 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 190 IPR000504 GO:0003723
Acco01g3654 496 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 483 - -
Acco01g3654 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3654 Acco-ChrAcco01 52829710 52832556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3654 118 374 Eukaryotic Initiation Factors Gene Family AT1G71770 26.296 4.04e-16 79.3