Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3622 ATGGGGACGTTCTTTCATGGAGGCAACTCAGAAATCCAATCCTCCGGTGCTTCTGGCGACGGCTTCCACACACTTTACCTTCTCAACCCCAGCCCCACCACCCCTTACGCTCCCTACTCCGATACAAGCCCCCACCCTCAACCCACACCCAACACGCTTCTTCTCAATCCCAACAACTCTCCCTCCAACGCCCTCAACCTCGCCACCTTCTCCAACCATAACCCCGACGATCCCTCCCGTTCCTCCTTCCTCTCACACGATATCTCCGCCTTCCACGGCTTCACTGCCGCGGCTCCTCCACGTGTTCAGCACAACCTCTGGGCTTCAATGATTGATCCTCACCCAACATCTAGCAGTTCCGGTGGGGGTCCCCCCGTCTCCGCCGCCCTCGACGTGTCGCCCCATATGAGTTTCAGGAGGCCTACTCATCAGCAAGGTCTGTCGCTGAGCCTCTCATCTGACCAGCAGACACCTTATAGATCGCTTTCCGGCGAGCTACACGTTCCTGGACAACCTCCAGCTGCTGCCATACAAACCTCCAGCTGCGATGATATGCGGATTCTGGTTCCAAGTAATCATGTCTCGTCGAATGGAGTTTCGAGTGTGCAGAATTTTGTTTTAGGATCGAAGTACTTGAGAGCAGCTCAGGAGGTATTGGAAGAAGTTGTTATTGTGGGCAAGGGAATAATCAACCAGGAGGGGGCTATGAAAGAGAAACTGAAAGCCAATAAAGAATCGACATCTGGTGGGAATCGTGACGGTTCAAGTGGTGGTGATGGAGGAGGACGAGGAGGAGAAAATAGTCGAAATGGGAAGCAAGGAGGTGAACTCAGTATAGCACAAAGACAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCACCATACTTGATGAGGTGGAACAAAGGTACAGACAGTATCACCACCAAATGCAGATAGTGATGGCATCATTTGAGCAGGCTGCGGGGTATGGTGCAGCCAAAACATACACATCCCTTGCCCTAAAGACCATCTCTAAGCAATTTCGATGTATCAAAGACGCAATCGCCTCACAAATAAGAGCGACAAGCAAAGGTTTGGGCGAAGAAGATTGCTTGGGAGCTAAGGTAGAAGGTTCCAGGCTGAGGTTTGTGGACCACCATCTTCGCCAACAACGCGCTTTACAGCAACTGGGAATGATACAACACAATGCTTGGAGGCCCCAAAGAGGATTGCCCGAACGAGCCGTCTCCATTCTTCGTGCTTGGCTCTTCGAGCATTTTCTTCACCCCTATCCCAAGGACTCTGATAAAGTTATGCTTGCAAAACAAGCCGGACTTACTCGTAGCCAGGTGTCAAACTGGTTCATAAATGCGAGAGTTCGGCTATGGAAACCAATGGTGGAAGAAATGTATATGGAAGAAATGAAAGAGCAAGAGGGGAATAATACTAATGAGGAGGTGGGGTCGAGCACTAAGGATGATTCACAGCCACAAGATCCAGGTGGGCTTCGGCTTGATCATCATCAGATGAAAGGCTTGCAATCAAATCCAGATCAAAGCTTCAATAACCAAACATCCACCCCGACCGACATCTCAAACCCCTCATCAATCTATCTTACAGGATTTCCCGTTGGATCATCGTCTCATCATCATCTTGACATGCAAATAAGAAAGAGTCCCAAAAAGCCAAGAAGTTCAGAAGTAATGAACAACTCTCCAAGCAGTATCCTGTCGGTGGACATGGAAATGAAGCCCGGAGACGCAGACAGATCAGAAGGAAACGCAAAGTCGTTTGGAATGGAAAGGCACAGTTTGATGAGTAATAATAATGGAGGAGAATATGGAGGATTCACCATACAAGACATGGGAAGGTACAACGTGGCTGACCAATTGGCTCCAAGGTTCCATGGAAACGGCGTGTCGCTCACTCTTGGACTTCCACATAACAGTAATGAGAACCTTCCTCGCCATGGATTTCTTTCTAACAACATGAACCTGGCTACTGACGGTACCGACTTCTGTGCGATCAACGCTCCGCCGCCGTCTCATTCCAACGGCAGTTATGACAATATTGATCACATTCAGAACAGAAAGAGGTTTGCTGCCCAGTTATTGCCTGATTTTGTGGCCTGA 2112 0.4924 MGTFFHGGNSEIQSSGASGDGFHTLYLLNPSPTTPYAPYSDTSPHPQPTPNTLLLNPNNSPSNALNLATFSNHNPDDPSRSSFLSHDISAFHGFTAAAPPRVQHNLWASMIDPHPTSSSSGGGPPVSAALDVSPHMSFRRPTHQQGLSLSLSSDQQTPYRSLSGELHVPGQPPAAAIQTSSCDDMRILVPSNHVSSNGVSSVQNFVLGSKYLRAAQEVLEEVVIVGKGIINQEGAMKEKLKANKESTSGGNRDGSSGGDGGGRGGENSRNGKQGGELSIAQRQELQMKKSKLVTILDEVEQRYRQYHHQMQIVMASFEQAAGYGAAKTYTSLALKTISKQFRCIKDAIASQIRATSKGLGEEDCLGAKVEGSRLRFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQAGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEGNNTNEEVGSSTKDDSQPQDPGGLRLDHHQMKGLQSNPDQSFNNQTSTPTDISNPSSIYLTGFPVGSSSHHHLDMQIRKSPKKPRSSEVMNNSPSSILSVDMEMKPGDADRSEGNAKSFGMERHSLMSNNNGGEYGGFTIQDMGRYNVADQLAPRFHGNGVSLTLGLPHNSNENLPRHGFLSNNMNLATDGTDFCAINAPPPSHSNGSYDNIDHIQNRKRFAAQLLPDFVA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3622 703 FunFam BEL1-like homeodomain protein 9 401 463 - -
Acco01g3622 703 Coils Coil 282 302 - -
Acco01g3622 703 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 484 - -
Acco01g3622 703 SMART HOX_1 398 462 IPR001356 GO:0003677
Acco01g3622 703 MobiDBLite consensus disorder prediction 33 81 - -
Acco01g3622 703 SUPERFAMILY Homeodomain-like 399 465 IPR009057 -
Acco01g3622 703 SMART prehox3 200 350 IPR006563 -
Acco01g3622 703 Pfam Associated with HOX 206 349 IPR006563 -
Acco01g3622 703 MobiDBLite consensus disorder prediction 468 572 - -
Acco01g3622 703 MobiDBLite consensus disorder prediction 475 490 - -
Acco01g3622 703 ProSiteProfiles 'Homeobox' domain profile. 395 458 IPR001356 GO:0003677
Acco01g3622 703 MobiDBLite consensus disorder prediction 240 274 - -
Acco01g3622 703 Pfam Homeobox KN domain 415 454 IPR008422 GO:0003677|GO:0006355
Acco01g3622 703 CDD homeodomain 398 458 IPR001356 GO:0003677
Acco01g3622 703 Gene3D - 401 479 - -
Acco01g3622 703 MobiDBLite consensus disorder prediction 505 536 - -
Acco01g3622 703 MobiDBLite consensus disorder prediction 46 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3622 Acco-ChrAcco01 52612374 52615384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3622 1 703 Homeobox Transcription Factor Family AT2G35940 41.393 8.89e-127 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Acco01g3622 POX 5.5e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3622 01 52612374 52615384 Acco08g0490 08 3896409 3900067 CCT
Acco01g3622 01 52612374 52615384 Acco01g3622 01 52612374 52615384 ECH