Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3621 ATGGCAGAAAGTGAAGTTCCTCAATATTTCGTGTGCCCTATTTCTCTTGAGATCATGAAAGATCCTGTGACGACCGTAGCAGGTATAACCTACGACAGAGACAGCATCGAGCAGTGGTTGCTCACCTCGATAGAGAGGAAATGCCCTGTCACCAAGCAGCCATTGCCTCCTAACTCAGCCTTGACCCCAAACTCTACCTTACTCAGGCTAATCCAGGCCTGGTCCTCCCAAAATAATGCTCAAAACGGCGTCGTTCGGGTCCCATCCCCGAAATCCCTCCTCACCTCCATCCACGTTCACAAGCTTATTTCTGATCTTCAGAATCCCCATCTGTATCAAACGACATTGATAAAAATGGATGCTTTGGCCACACACAGCGAAATCAACAGAAGGTGCATGGTGGAATCTGGAGTACTCGAGGCTATGGTTTCCATAATTACTCAGAGTTTCAAAGAAGGTACAACAACTTGCCTTGAAGAAGCTTTGAGAATTTTTGGTTTACTCTGGGCTACATCGTCATCCATGCCTCATATGAAGCCTCTGTTCTGTGAAAACTTAGACTTTATCATCACCTCTTTGACCTGGGCTTTGCAAATTGATGTCACCAACCGCGTTAACATAGTAAACGAAACAATGCCTTTTCTGAAGTCGACCATTGAAGCCGCAGATTCAAGCCTTCTGGGAAACTTAAAGGTTGGATTTTTCAGGGAAATAACAAGGGTGCTAAAGAACAGAACAGTCTCAGAGCAGGCCGTGAAATCAGCCTTGCAGGTTCTCATAGAAACGTGCCTGTTAGGAAGAAACCGAATGAAAATCGTAGAATCAGGAGCAGTCTTTGAATTAATTGATCTTGAGCTGGAAAAACCAACAAAGAAGATAACAGAACTGGTGTTCAACCTTCTGACGCATCTATGTTCGTGTGCTGATGGGAGAGAGCATTTTCTGCAACACGCAGCGGGAATCGCTGTTATATCTAAGAGGATTCTGAGGGTTTCGAGTGCAACAGACGATCGAGCTCTTCATATCTTATCGTTGATATCCAGGTACTCGTCTTCGAACAATGTTGTTTTGGAGATGTTGAGGGTGGGAGCTGTGTCCAAGCTTTGCATGGTGATGCAAGCTGACTGTGCTTGGTATTTGAAGGAGAAAGCAAGAAGTATCCTTAGGTTACACTCCAAAACTTGGAACAATTCTCCTTGCATTCAGGTATATTTGTTAACAAGGCACCAAGGGTGA 1236 0.4466 MAESEVPQYFVCPISLEIMKDPVTTVAGITYDRDSIEQWLLTSIERKCPVTKQPLPPNSALTPNSTLLRLIQAWSSQNNAQNGVVRVPSPKSLLTSIHVHKLISDLQNPHLYQTTLIKMDALATHSEINRRCMVESGVLEAMVSIITQSFKEGTTTCLEEALRIFGLLWATSSSMPHMKPLFCENLDFIITSLTWALQIDVTNRVNIVNETMPFLKSTIEAADSSLLGNLKVGFFREITRVLKNRTVSEQAVKSALQVLIETCLLGRNRMKIVESGAVFELIDLELEKPTKKITELVFNLLTHLCSCADGREHFLQHAAGIAVISKRILRVSSATDDRALHILSLISRYSSSNNVVLEMLRVGAVSKLCMVMQADCAWYLKEKARSILRLHSKTWNNSPCIQVYLLTRHQG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3621 411 SUPERFAMILY RING/U-box 4 80 - -
Acco01g3621 411 PANTHER WDSAM1 PROTEIN 4 402 IPR045185 GO:0061630
Acco01g3621 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Acco01g3621 411 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Acco01g3621 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Acco01g3621 411 Gene3D - 98 398 IPR011989 -
Acco01g3621 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Acco01g3621 411 CDD RING-Ubox_WDSUB1-like 7 64 - -
Acco01g3621 411 SUPERFAMILY ARM repeat 232 390 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3621 Acco-ChrAcco01 52604776 52606011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3621 3 408 U-box Gene Family AT3G11840 40.132 8.57e-92 282