LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3620	ATGTCCCTTCTTCTCCATCCCAAATCTGACTTCCCTCTTGGCCACAATTTGCTCTTCCCCCTTGTTCTTCTGAACATGGAAGAAATCGACGTTCCTTCTCATTTTCTCTGCCCCATTTCCCTGCAGCTCATGAGGGACCCCGTCACGGTACGCACCGGGATCACTTACGATCGAGAAAACATTGAAACGTGGCTGTTTTCGTGCAAGAACAGAACATGCCCTGTCACGAAGCTATCCATTTTAGATACAGATCTCACCCCAAACCACACGCTTCGACGTCTCATCCAGGCTTGGTGCACCCTGAATGCATCCTTTGGGATCGAGCGTATTCCCACTCCCAAGCCACCCGTCAACAAAATCCAGATCGCCAAAATCCTCTCCGAAGCAAACCAATCCCCACAAGACCATCTTAAATGCCTCAAAAGGCTCCGATCCATTGTTTTCGAAAGCGACAGGAACAAGATTTATTTGGAATCTGCAGGGGCAATTGAGTTCTTGGCCTCAGCCTTAAAGTTAAGCAGTTGCAGAGATGCCCAAGTTAACCACGACGAGGAATGTACAACCGTTATGGGCAGTGAAGAAGCAGCGCTTGAGGTTCTGTACCATCTAAAACCTTCAGAGTCTCACATTAAGAGTCTAATCAGCAACGAGGGAATTAAATTCATCGACTCCTTGATCCAAATCCTGAGGACCGGGAACTACCAATCCCGAGCCTATGCGACAGTATTACTAAAATCAGCGTTCGGAGTGGCAGATCCAAGCCAATTGATCAATGTGAGAACAGAATTGTTGGCGGAACTCGCGAGAGTGTTGCGAGACAAGATTTCACAGCAAGCCACAAAGGCGGCGTTGAAGCTGGTGGTGGAGCTGTGTCCATGGGGGAAGAACAGGATCAAAGCGGCGGAAGGCGGCGTGGCAGAAGTGCTGATAGAGATGCTTCTAGAAGCATGGGAGAGAAGAGTGTGTGAACTGATTCTGATAGCGTTGGATCAACTGTGTGGGTGCGCAGAAGGAAGAGCAGAGGTAGTGAAGCACGGCGCAGGAGTGGCGATAGTGTCGAAGAAGATTCTGAGAGTATCACACTTGGCAACGGACAGAGGGGTGAAGATATTGAGCTCAATATGTAGGTATTCAGGGAATGCGAGGGTAATTCAGGAAATGTTGCAGGTGGGGGCGGTGTGTAAGCTGTGTTTGGTGCTTCAGGTGGAGGCGAGCTTGAAGACGAAGGAGAGGGCCAAGGAGCTTCTCAAATTGCACTCCAACGTTTGGAGCATTTCCCCCTGTATTCCCCCTCCTCTCCTCCAATCCTATCCTTCCTCTAATTGA	1326	0.4955	MSLLLHPKSDFPLGHNLLFPLVLLNMEEIDVPSHFLCPISLQLMRDPVTVRTGITYDRENIETWLFSCKNRTCPVTKLSILDTDLTPNHTLRRLIQAWCTLNASFGIERIPTPKPPVNKIQIAKILSEANQSPQDHLKCLKRLRSIVFESDRNKIYLESAGAIEFLASALKLSSCRDAQVNHDEECTTVMGSEEAALEVLYHLKPSESHIKSLISNEGIKFIDSLIQILRTGNYQSRAYATVLLKSAFGVADPSQLINVRTELLAELARVLRDKISQQATKAALKLVVELCPWGKNRIKAAEGGVAEVLIEMLLEAWERRVCELILIALDQLCGCAEGRAEVVKHGAGVAIVSKKILRVSHLATDRGVKILSSICRYSGNARVIQEMLQVGAVCKLCLVLQVEASLKTKERAKELLKLHSNVWSISPCIPPPLLQSYPSSN	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3620	441	Pfam	U-box domain	31	100	IPR003613	GO:0004842\|GO:0016567
	Acco01g3620	441	SUPERFAMILY	ARM repeat	130	407	IPR016024	-
	Acco01g3620	441	SUPERFAMILY	RING/U-box	26	102	-	-
	Acco01g3620	441	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	24	105	IPR013083	-
	Acco01g3620	441	PANTHER	WDSAM1 PROTEIN	27	430	IPR045185	GO:0061630
	Acco01g3620	441	Gene3D	-	120	424	IPR011989	-
	Acco01g3620	441	FunFam	RING-type E3 ubiquitin transferase	25	108	-	-
	Acco01g3620	441	ProSiteProfiles	U-box domain profile.	30	105	IPR003613	GO:0004842\|GO:0016567
	Acco01g3620	441	SMART	Ubox_2	34	98	IPR003613	GO:0004842\|GO:0016567
	Acco01g3620	441	CDD	RING-Ubox_PUB	32	85	IPR045210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3620	Acco-ChrAcco01	52597269	52598594	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3620	27	439	U-box Gene Family	AT3G52450	51.264	5.83e-150	431