LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3613	ATGTTTCGGGGGGGCCCCAAAAGAAGTGACAACACCAAGTACTATGAGATTCTGGGCGTCTCCAAGGACGCATCCCAGGATGATTTGAAGAAGGCTTACAGAAAAGCCGCCATAAAGAACCACCCCGACAAGGGCGGTGATACCGAGAAAGGAGTTCCATCCCGAGCTACCACCTTGGAGAAGGGAATGCAGAATGGACAGAAAATTACATTCCCTGGTGCAGCGGATGAGGCGCCAGATACGATAACAGGGGACACAGTGTTTGTCCTTCAGCAGAAGGAGTACCCCAAGTTTAGGAGGAAGGGCGAAGATCTTTTTGTAGAGCACATTTTGCCCCTTACGAAGGCTTTATGTGGCTTTCAATTTGTGCTGACTCACCTGGATGGTAGGCAGCTCCTCATCAAATCAAACCCAGGGGAAGTTGTCAAGCCTGATTCATACAAGGCAATTAATGACGAAGGAATGCCGATGTACCAGAGGCCATTCATGAAGGGAAATCTTTACATTCACTTTACTGTAGACTTCCCAGATTCTCTGAGTCCTGACCAAGTTAAAGAGTTGGAGGGTGTTCTACCGCCTGGGCCTTCAACACAGTTGACGGACATGGAGCTGGATGAATGTGAGGAAACTACACTTCATGATGTCAATATTGAGGAGGAAATGAGGAGGAAGCAACAAGCACAGCAGGAAGCATATGACGAGGATGAGGATATGCCTGGTGGCGCTCAGAGAGTACAATGCGCTCAGCAGTGA	753	0.4874	MFRGGPKRSDNTKYYEILGVSKDASQDDLKKAYRKAAIKNHPDKGGDTEKGVPSRATTLEKGMQNGQKITFPGAADEAPDTITGDTVFVLQQKEYPKFRRKGEDLFVEHILPLTKALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGNLYIHFTVDFPDSLSPDQVKELEGVLPPGPSTQLTDMELDECEETTLHDVNIEEEMRRKQQAQQEAYDEDEDMPGGAQRVQCAQQ	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3613	250	SUPERFAMILY	Chaperone J-domain	8	50	IPR036869	-
	Acco01g3613	250	PRINTS	DnaJ domain signature	33	48	IPR001623	-
	Acco01g3613	250	PRINTS	DnaJ domain signature	15	33	IPR001623	-
	Acco01g3613	250	PANTHER	DNAJ-LIKE-2, ISOFORM A-RELATED	11	50	IPR044713	GO:0006457\|GO:0030544
	Acco01g3613	250	SUPERFAMILY	HSP40/DnaJ peptide-binding domain	98	185	IPR008971	GO:0006457\|GO:0051082
	Acco01g3613	250	MobiDBLite	consensus disorder prediction	212	250	-	-
	Acco01g3613	250	FunFam	DnaJ subfamily A member 2	95	177	-	-
	Acco01g3613	250	Pfam	DnaJ C terminal domain	58	176	IPR002939	-
	Acco01g3613	250	CDD	DnaJ_C	60	179	-	-
	Acco01g3613	250	Gene3D	DnaJ domain	6	59	IPR036869	-
	Acco01g3613	250	Gene3D	-	95	177	-	-
	Acco01g3613	250	MobiDBLite	consensus disorder prediction	212	231	-	-
	Acco01g3613	250	CDD	DnaJ	14	50	IPR001623	-
	Acco01g3613	250	ProSiteProfiles	dnaJ domain profile.	13	99	IPR001623	-
	Acco01g3613	250	Pfam	DnaJ domain	13	47	IPR001623	-
	Acco01g3613	250	Coils	Coil	217	237	-	-
	Acco01g3613	250	SMART	dnaj_3	12	95	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3613	Acco-ChrAcco01	52526279	52528432	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3613	4	44	C2H2 Transcription Factor Family	AT1G74250	41.463	6.80e-06	45.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco01g3613	01	52526279	52528432	Acco08g0504	08	4059084	4061243	CCT
	Acco01g3613	01	52526279	52528432	Acco01g3613	01	52526279	52528432	ECH