Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3609 ATGTCAATGGATATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATCCTAGCGGTAAGTGTTCCATGCGGCAGTTTCCTTACCATAGTGACGGTTCGATGTGGGCATTGTGCTAATTTACTGTCAGTCAACATGGCGGCATCTGTCCAAACATTCCCTCCTCAAGAGCTTGAGAAACAGCGCCTAAGCTATGAAGGATCAAGCAACAGAGAAGCGGGATCATCTTCAAAATGCAGTAAATTTGCTGCATTTGAGTCAGCAGAACATGAACAACACAGGATTCCTCCCGTTCGTCCTCCCGAGAAGAGACAACGAGTTCCTTCTGCTTATAACAGGTTCATCAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCTGATATCAGCCACAGGGAGGCATTTAGCGCAGCGGCCAAAAATTGGGCACATTTTCCTCATATTCACTTGGGATTAAAGCTAGATGGCAACAAGCAAGAAAAGTTGGACCTGGAAGAGGGCACTCAAAAATCTAATAATGGCCTTTATTGA 546 0.4487 MSMDMMATERVCYVHCNFCNTILAVSVPCGSFLTIVTVRCGHCANLLSVNMAASVQTFPPQELEKQRLSYEGSSNREAGSSSKCSKFAAFESAEHEQHRIPPVRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSAAAKNWAHFPHIHLGLKLDGNKQEKLDLEEGTQKSNNGLY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3609 181 CDD HMG-box_SF 111 147 - -
Acco01g3609 181 Gene3D High mobility group box domain 91 169 IPR036910 -
Acco01g3609 181 FunFam Axial regulator YABBY 102 174 - -
Acco01g3609 181 Pfam YABBY protein 7 157 IPR006780 GO:0007275
Acco01g3609 181 MobiDBLite consensus disorder prediction 93 112 - -
Acco01g3609 181 PANTHER PROTEIN YABBY 6-RELATED 1 167 IPR006780 GO:0007275
Acco01g3609 181 SUPERFAMILY HMG-box 101 150 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3609 Acco-ChrAcco01 52489461 52494962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3609 1 181 C2C2-YABBY Transcription Factor Family AT1G08465 62.366 2.15e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Acco01g3609 YABBY 5.6e-70 CL0114