Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3601 ATGAGCTGGAGCAGAGGTAGCGTCTTAGGCCATGGCTCATCGGCCACCGTCTCCCTGGCCGCCTCTCCCCAGTGTGGCGAACCCTTCTTCGCCGTCAAGTCATCGGAGCTTTCTTGCTCAGGATTGTTACAGAGAGAGCAGAGAATTCTCTCTTCTTTGTCTTCTCCTTATATAGTAAGCTATAAAGGGTGTGACATCACAAGGGAGAACAACAAGGTTTTGTACAATCTTTTCATGGAGTATATGCCTCTTGGCACGCTTAATCAGGCAACTCACCGGCAGGGTGGCCGCCTCGACGAGCCGATGATCGCGTACTACATTCGGCAAGTTTTGCAGGGGCTGGAGTATCTACATTCAAATGGGTTGGTACATTGTGACATTAAGGGTGCCAATATCTTGATTGGAGAATATGGAGCCAAAATTGCAGACTTTGGATGTGCTAAGCGGGCGCCGGTGGCGGCGCCGATAAGTGGGACGCCGATGTTTATGGCGCCGGAGGTGGCTCGTGGGGAAGAACAGTGGTATCCTTGTGACATATGGGCACTTGGGTGCACTGTGATTGAAGTGGCTTCAGGGCTTTCACCATGGCCTAATGCAGGAGACCCTGTTTCGATTCTTTACCGGATAGCATATTCCGGCGCGGTGCCGGAGATTCCGGGTTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGCGGAATCCAAAAGAGAGATGGACGGCAAGTCAACTACTGAAGCATCCATTTCTTGGGGAATTGAATTCCAATTCCAAGCAAATCGACGAATCTAATTCAAGTTCGCCAACAAGTATTCTGGAGCAAGGCTTTTGGAGTTCAATGGAAGAATCAGAGACTGTAAGCAATCCAGTACATAGTCACACAAGTTTCGAAAATTCGCCAGCTGTTAGAATCAGACAATTAGCTGTGAGTTCAGGGGAACCCAATTGGATAGAAGATGAGAATTGGATCACAACGATAGGGAATGAAGGATCGGTAATTGAAGCATCAACGAGCAATAATTTGGAAGAGTCAGAGAAAAGCAATGTTACTGTTAGTAGTAGAATTAGTGATTGTTTTTGGGATGATTACCAAGCTCAGAAGATAGAACTGCTGTCTTGTCTGGCCTCTTTTAAGCACGACCACACAAAAGAACTCAAGATTATGTTTGAATTCGCCCTTGGTGCTAATTCTGAAAACGACTATATACTACAATATCATCGATATGGGAAATAA 1242 0.4638 MSWSRGSVLGHGSSATVSLAASPQCGEPFFAVKSSELSCSGLLQREQRILSSLSSPYIVSYKGCDITRENNKVLYNLFMEYMPLGTLNQATHRQGGRLDEPMIAYYIRQVLQGLEYLHSNGLVHCDIKGANILIGEYGAKIADFGCAKRAPVAAPISGTPMFMAPEVARGEEQWYPCDIWALGCTVIEVASGLSPWPNAGDPVSILYRIAYSGAVPEIPGFLSEEAKDFLGKCLRRNPKERWTASQLLKHPFLGELNSNSKQIDESNSSSPTSILEQGFWSSMEESETVSNPVHSHTSFENSPAVRIRQLAVSSGEPNWIEDENWITTIGNEGSVIEASTSNNLEESEKSNVTVSSRISDCFWDDYQAQKIELLSCLASFKHDHTKELKIMFEFALGANSENDYILQYHRYGK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3601 413 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3601 413 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Acco01g3601 413 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 296 - -
Acco01g3601 413 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3601 413 SUPERFAMILY Protein kinase-like (PK-like) 3 313 IPR011009 -
Acco01g3601 413 CDD STKc_MAPKKK 2 253 - -
Acco01g3601 413 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3601 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Acco01g3601 413 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Acco01g3601 413 FunFam Mitogen-activated protein kinase kinase kinase 17 2 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3601 Acco-ChrAcco01 52424779 52427125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3601 2 349 MAP Kinase Kinase Kinase AT5G55090 49.457 1.04e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Acco01g3601 Pkinase 3.9e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3601 01 52424779 52427125 Acco08g0539 08 4318824 4320029 CCT
Acco01g3601 01 52424779 52427125 Acco01g3601 01 52424779 52427125 ECH