Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3574 ATGCCTGCCGGCATGATGATTCCGGCCAGAAATATGACCTCGGTGATCGGAAGGAACGTCAACGTTGGTGCTTTTGGATCATCCTCAGGTCTCACTCTCAGCCAGCCAAACATGATGGAAGGTCATCAGCTGCTCCCATTTGACATGGCTCCCAACACCTCCGAGAGCGATGTCGTCCCCCGCATCCGAGACGACGACTTTGACAGCGCCACCAAGTCTGGCAGTGAAAACCAGGAAGCCGCCTCCGGCGACGACCACAATCCCCGCCCCAATAAGAAGAAGCGCTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGCCCGCATCCAGATGACAAGCAGAGAAAGGAACTGAGCCGGGAATTAGGGTTAGAGCCATTGCAGATCAAGTTTTGGTTTCAAAACAAGCGAACTCAGATGAAGACCCAACATGAGCGGCAAGAGAACTCACAACTTAGAGCCGAGAATGAGAAGCTTAGAGCAGACAACATGAGGTATAGGGAAGCTCTTAGCAATGCCTCGTGCCCAAATTGCGGGGGACCAACTGCTATAGGTGAAATGTCTTTTGATGAGCATCATTTGAGAATGGAAAATGCTCGCCTACGAGAAGAGATTGATAGGATATCAGCAATTGCTGCAAAGTACGTGGGGAAGCCAGTGGTGAACTATCCACTACTTTCACCAACATGTATTCCTGCGCGGCCACTGGAACTGGGTGGTTTTGGTGGGGATGTATATGGAGGTGGAGATCTTGTTAGGTCTATGAGTGGGCCCAGCGAAGCTGATAAGCCGATGATAATAGAACTGGCTGTGGCTGCCATGGAAGAGCTTGTGAGGATGGCTCAAATGGGTGACCCCTTATGGATGACCACTCTTGATGGAACTTCCTCTGTGCTTAACGAAGACGAATATATCAGAAGTTTCCCTCGTGGAATTGGTCCAAAACCTGCTGGGTTCAAGTGTGAAGCTTCACGAGAAACTGCTGTTGTCATCATGAACCATATTAGCCTTGTTGAGATTCTCATGGATGTGAATCAATGGACCACAGTGTTCTCGGGTATAGTCTCAAGAGCGATGACACTGGAAGTATTATCAACTGGGGTGGCTGGGAACTACAATGGAGCCTTGCAAGTGATGACGGCAGAGCTACAAGTACCTACACCTCTAGTGCCAACTCGAGAGAGTTATTTTGTAAGATACTGCAAACATCACGGGGAAGGGACATGGGCAGTGGTGGATGTGTCGCTGGATCATTTGCGTCCTAGCCCTTCTGTTAGATGTAGAAGAAGACCTTCCGGTTTTTTAATTCATGAAATGCCTAATGGCTACTCTAAGGTGACGTGGGTTGAGCATGTAGAGGTGGACGACAGAGGAGTTCATGATCTATACAAGCAGCTCGTGAGCTGTGGACATGCTTTTGGGGCAAAACGTTGGGTGGCTACCTTGGATCGACAATGTGAAAGGCTTGCTAGTTCCATGGCTACCAATATTCCTACCGGTGATGTTGGAGTGATAACCAATCAAGAAGGGAGGAAGAGTATGCTGAAACTGGCGGAGAGAATGGTGATGAGTTTTTGTGCAGGAGTGAGCGCTTCTACAGCTCACACGTGGACTACACTGTCCGGAACGGGGGCTGACGACGTACGGGTCATGACCCGTAAGAGTGTGGATGACCCGGGAAGGCCTCCTGGCATTGTTCTCAGCGCTGCAACTTCTTTTTGGCTTCCAGTTCCTCCTAACAGAGTTTTTGATTTCCTCCGTGATGAGAATTCCAGAAATGAGTGGGATATTCTTTCGAATGGTGGAGTAGTCCAAGAAATGGCACATATAGCTAATGGCCAGGACACAGGGAATTGTGTCTCTCTACTTCGAGTAAATAGTGCCAATTCAAGCCAAAGCAACATGTTGATACTGCAAGAAAGCTGCAGAGACACGACGGGGTCGTTTGTGGTATATGCACCGGTGGATATAGCTGCAATGAACTTGGTTCTAAATGGAGGGGATCCTGACTACGTGGCCCTTCTTCCTTCTGGATTTGCCATACTTCCAGATGGAGCCACGGCACATAATGGAGGATCCCTCTTAACTGTTGCATTCCAAATTTTGGTGGACTCAGTTCCCACAGCCAAACTATCTCTTGGATCTGTTGCCACTGTCAATAATCTCATTGCCTGCACTGTTGAGAGAATCAAGGCCTCTTTATCCTGTGAACCTGCTGCTTAA 2244 0.4889 MPAGMMIPARNMTSVIGRNVNVGAFGSSSGLTLSQPNMMEGHQLLPFDMAPNTSESDVVPRIRDDDFDSATKSGSENQEAASGDDHNPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKTQHERQENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRMENARLREEIDRISAIAAKYVGKPVVNYPLLSPTCIPARPLELGGFGGDVYGGGDLVRSMSGPSEADKPMIIELAVAAMEELVRMAQMGDPLWMTTLDGTSSVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHISLVEILMDVNQWTTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPTPLVPTRESYFVRYCKHHGEGTWAVVDVSLDHLRPSPSVRCRRRPSGFLIHEMPNGYSKVTWVEHVEVDDRGVHDLYKQLVSCGHAFGAKRWVATLDRQCERLASSMATNIPTGDVGVITNQEGRKSMLKLAERMVMSFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPNRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCRDTTGSFVVYAPVDIAAMNLVLNGGDPDYVALLPSGFAILPDGATAHNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEPAA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3574 747 ProSiteProfiles START domain profile. 266 498 IPR002913 GO:0008289
Acco01g3574 747 SMART START_1 275 495 IPR002913 GO:0008289
Acco01g3574 747 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Acco01g3574 747 FunFam Homeobox-leucine zipper protein HDG1 78 166 - -
Acco01g3574 747 MobiDBLite consensus disorder prediction 58 72 - -
Acco01g3574 747 MobiDBLite consensus disorder prediction 47 101 - -
Acco01g3574 747 Pfam START domain 276 495 IPR002913 GO:0008289
Acco01g3574 747 Pfam Homeodomain 93 148 IPR001356 GO:0003677
Acco01g3574 747 Gene3D - 78 167 - -
Acco01g3574 747 CDD START_ArGLABRA2_like 270 494 - -
Acco01g3574 747 SMART HOX_1 91 154 IPR001356 GO:0003677
Acco01g3574 747 SUPERFAMILY Bet v1-like 514 738 - -
Acco01g3574 747 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Acco01g3574 747 Gene3D - 330 479 IPR023393 -
Acco01g3574 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 91 741 IPR042160 -
Acco01g3574 747 SUPERFAMILY Homeodomain-like 82 150 IPR009057 -
Acco01g3574 747 CDD homeodomain 93 151 IPR001356 GO:0003677
Acco01g3574 747 Coils Coil 149 176 - -
Acco01g3574 747 FunFam Homeobox-leucine zipper protein GLABRA 2 275 494 - -
Acco01g3574 747 SUPERFAMILY Bet v1-like 268 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3574 Acco-ChrAcco01 52277867 52281585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3574 62 746 Homeobox Transcription Factor Family AT1G05230 81.034 0.0 1154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco01g3574 START 1.9e-58 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3574 01 52277867 52281585 Acco08g0881 08 8010966 8017877 CCT
Acco01g3574 01 52277867 52281585 Acco01g3574 01 52277867 52281585 ECH