Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3563 ATGGATCCTCTGTGCGAGTTATGTGTAGAAGCAAGAGCTGTGGTGTATTGCAAGTGTGATTCTGCGTGTCTCTGCTTCAGCTGTGATGCTTATGCACACTCCACCAACCCACTGTCACGCGGGCATCTTCGTTCGCTGATATGTGACAGATGTCTCTCCCAATCAGCGATTGTCCGTTGCATGGATGATAAAATGTCTACGTGCCAAGGTTGTGATTGTAATCGAAATGCTTGTCTGGGATTGGGACACAGGCGTATGAAGTTGATTAGTTACACAGGTTGTCCCTCTTTTGCTGACATGTGTAGGATTTGGCCTTTTGCTTTTGACTCTATTTCAGGTGGTTTAGGTTTGGCTCATAGTTGGGGATCGTTTAATTCTTTGCCTAAGAGCCAAAGCCAGTGTTTGGTGCAGCTAGATGACAATGATGCATCCTTCGGTGACACGTCGAGCGAACTTGAATCTTGTGCAAAATATGAACCTGAGATGGCTCAATCTTCTATCCTTCAAAAAAATCCAAATTTCATGCCCTACTGCAGAGATCAACCAGTTTTACTTCCTCAAGTCTCTAACCTCCAGCCAAAGGGATGTAACGATTCGAAGGATATTGGGATTTCTGAGGCTAATGACCTCTGTGAAGGTCTTAACTTGGACGGCGTTCAATTAAACTTGGACGCTGCTAATGAAATATTCGATTGCTCTCAAGATGCCGCTGGTTACCAGGTTGAGGATGGAGGATTGGATTGTCTCTTAATGGAAAATAACATATCAGTTACAGAACCTAATCGCCTTTTTCAGAATGCCATGGAGGTTATAGCTTCTTTTATCATTCTCCCCTCCAAAAAGCAAGCAGTCCAGCAAGGTTGTGTGGGTTTTCAATCATCCAGGGAAGTTGGATCAGGTTCTATGATCCAGGGCAATACAAACTGCGTCCTCATGGATTCTAGCTGCAACGCAAAAATGAATCTGGCATTTCCTCCTGAGGGTCAGGTTCATTCAAGCATACCACTTTCATTACCCACCATGAATTGTAATAGTGACACTACCACTAAGGTTTTTCAGGATGGCGCCACTTTTGAGTTTCAAGATTGTGGATTATCTCCACCACTGTTGCCAGTAGATTCGCGATGGAAATCAAATTTGAAGTCTTCATGCCCACAAGCAAGGGAGAAAGCTAAAGCAAGGTACTTCGAGAAAAAGAAGACTCGAACGTTTGGTAAACAAATAAGGTATGCGTCTCGCAAAGCAAGAGCTGATACTAGAAAACGGATAAAAGGTAGATTTGTGAAAGCAGAAAAAGAATATGATTCTGACTAA 1314 0.4323 MDPLCELCVEARAVVYCKCDSACLCFSCDAYAHSTNPLSRGHLRSLICDRCLSQSAIVRCMDDKMSTCQGCDCNRNACLGLGHRRMKLISYTGCPSFADMCRIWPFAFDSISGGLGLAHSWGSFNSLPKSQSQCLVQLDDNDASFGDTSSELESCAKYEPEMAQSSILQKNPNFMPYCRDQPVLLPQVSNLQPKGCNDSKDIGISEANDLCEGLNLDGVQLNLDAANEIFDCSQDAAGYQVEDGGLDCLLMENNISVTEPNRLFQNAMEVIASFIILPSKKQAVQQGCVGFQSSREVGSGSMIQGNTNCVLMDSSCNAKMNLAFPPEGQVHSSIPLSLPTMNCNSDTTTKVFQDGATFEFQDCGLSPPLLPVDSRWKSNLKSSCPQAREKAKARYFEKKKTRTFGKQIRYASRKARADTRKRIKGRFVKAEKEYDSD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3563 437 SMART bboxneu5 1 47 IPR000315 GO:0008270
Acco01g3563 437 CDD Bbox1_BBX-like 4 47 - -
Acco01g3563 437 ProSiteProfiles CCT domain profile. 388 430 IPR010402 GO:0005515
Acco01g3563 437 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 432 - -
Acco01g3563 437 Pfam CCT motif 388 430 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3563 Acco-ChrAcco01 52199528 52201231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3563 1 437 C2C2-CO-like Transcription Factor Family AT3G21880 34.773 2.35e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco01g3563 CCT 9.6e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3563 01 52199528 52201231 Acco01g3563 01 52199528 52201231 ECH