Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3553 ATGGATCATAACTTTGTCTCACCCTATTCTGCCGCCGATGACGCCTCCTCCTTGGACCCAATGTTTTCAGGCGTCACCCTTCAGTCCATCCTCAGCTTCAATCCCTCTGTTTTCTCTGATTACACCACCGCCAATGGCCTCCCCAGCTTCGCCTTCGTATCGGATCCTTTCCTGTCTCTGAATCTTCCGGCTGAACCTCCCCAGGGCTTTCCCACTGATGAGGACCTCATGGCCGACACGAGTGAGAAGAACCCGACGATCATGCCCAAACCTGAGCCAGGTCTCTTCGAATACCTTGCCACCTCTGGGACCACTTCTCATTCCTTCGACTTCTTCTCCAGCCTTTGCCCTCCCAGCTTCTACGATCCATCAATCTTCAACCCTCTCCCTCAGCTCCATTCCGTCGAATCCTATCCTCATAAGCGTCCCCGTTTCGACTCACTCATTTCTACTCCCAACACCATACCGGCGCCGCCGCAACACAGCCCTCACCCTGCCACCTTCGGCAACAGCCTCTTGGCTATCACGCCTCCGCACAACACCAAACTGGCCTCTTCTTCGCTGGATGCTCCCGCCGGTGAAAAATCATCTCCAGTGATCCCTCAGAGCAGCCTGGCACGTCAGCGGCGACAGAAGCTGAGCGACAAGACTCGGTGCTTGCAGAAATTGATGCCGTGGGACAAGAAGATGGACCAAGCGACGCTGCTGGAGGAGGCGTACAAATATGTGAAATTTCTGCAGGCCCAGTTCAATGCCCTCCAATCCATGCCTTCCCATTCGCCTTTCCTGTCCCACTGTGATTCTTCGCATTCCGAATCCTCCGTTCAAAACGGCGGCGTCTTTGGGGATTTGGAGAGGTTGAACCGCAACCAGGTGTTGCAGGTGCTGGTGAACTCGCCTGTCGCTCAAACAAGGCTTTGCTCCCAAGGCTTCTGTGTGTTCTCCGTGGAACAGTTAACTTTGCTGAGCAACACGACAGGGAAGAGGCTTATCCTGCCGCAGATGATGTCTGATAACGCTTCTTCAAAATCTTTTCAGTGA 1041 0.5408 MDHNFVSPYSAADDASSLDPMFSGVTLQSILSFNPSVFSDYTTANGLPSFAFVSDPFLSLNLPAEPPQGFPTDEDLMADTSEKNPTIMPKPEPGLFEYLATSGTTSHSFDFFSSLCPPSFYDPSIFNPLPQLHSVESYPHKRPRFDSLISTPNTIPAPPQHSPHPATFGNSLLAITPPHNTKLASSSLDAPAGEKSSPVIPQSSLARQRRQKLSDKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQFNALQSMPSHSPFLSHCDSSHSESSVQNGGVFGDLERLNRNQVLQVLVNSPVAQTRLCSQGFCVFSVEQLTLLSNTTGKRLILPQMMSDNASSKSFQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3553 346 Gene3D - 201 260 IPR036638 GO:0046983
Acco01g3553 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 257 IPR036638 GO:0046983
Acco01g3553 346 Pfam Helix-loop-helix DNA-binding domain 207 247 IPR011598 GO:0046983
Acco01g3553 346 MobiDBLite consensus disorder prediction 164 208 - -
Acco01g3553 346 SMART finulus 203 252 IPR011598 GO:0046983
Acco01g3553 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Acco01g3553 346 MobiDBLite consensus disorder prediction 149 212 - -
Acco01g3553 346 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 200 323 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3553 Acco-ChrAcco01 52141488 52142528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3553 209 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 46.491 4.12e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g3553 HLH 0.00026 No_clan