Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3541 ATGAAGAATTGTGAGCTGTGCAAGGCTCCGGCAAAGACCTACTGCGAGTCTGACCAGGCTAGCTTGTGTTGGGAATGCGACGCTAAGGTCCATGGAGCCAACTTCTTGGTAACCAGGCACTCCAGGACTCTTCTCTGTCATGCGTGTCAGTGTCTAACTCCATGGAAAGCGTCTGGTGCAAAGCTCGGAAACACCCTTTCTCTCTGCGAAAGTTGTGCAGGCGGAATGAAGGATGCCGGCGGCGGTGACGAGAGCGAAGATGGAAATGACGACGACGTAGACACAGAGGACGATCTTGACGATGAAGATGACAACGATGAAGGCGACGGTGGTGGTGGAGATGAGGATGGAGATAATCAGGTAGTTCCCTTGTCCTCCACACCGCCTCCACCGGTTTCAAACTCATCCAGTAGCGAAGAGTCAATTAGCAGATGCGATAGCATCAATAGAGTTGTTTCTGAAACGGCGAGCACAATATCGTTGAAACGAAGGCGTGAGGATGCATCGGATCTTAATTTCCAGGATCGTTGGAAGTGGTGGCGTGATAAAGATGGGAAAGGAGGGGAGCTAAAAAAGCAGGTGGCGTGGTTAGAATGTGAAGGGGGCGAAGGAACGTCGGAGGAATTGCCGAGAGGCAGAGAGATCGGACCGGCGACCTTGAAGGGATCCAATGATGCCAAAACGCCGGAAGCCGTTTGA 699 0.5222 MKNCELCKAPAKTYCESDQASLCWECDAKVHGANFLVTRHSRTLLCHACQCLTPWKASGAKLGNTLSLCESCAGGMKDAGGGDESEDGNDDDVDTEDDLDDEDDNDEGDGGGGDEDGDNQVVPLSSTPPPPVSNSSSSEESISRCDSINRVVSETASTISLKRRREDASDLNFQDRWKWWRDKDGKGGELKKQVAWLECEGGEGTSEELPRGREIGPATLKGSNDAKTPEAV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3541 232 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Acco01g3541 232 MobiDBLite consensus disorder prediction 79 147 - -
Acco01g3541 232 CDD Bbox1_BBX-like 4 45 - -
Acco01g3541 232 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 168 - -
Acco01g3541 232 SMART bboxneu5 1 45 IPR000315 GO:0008270
Acco01g3541 232 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Acco01g3541 232 MobiDBLite consensus disorder prediction 201 232 - -
Acco01g3541 232 MobiDBLite consensus disorder prediction 84 114 - -
Acco01g3541 232 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3541 Acco-ChrAcco01 52011521 52012361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3541 2 132 C2C2-CO-like Transcription Factor Family AT4G27310 44.512 3.59e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco01g3541 zf-B_box 8.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3541 01 52011521 52012361 Acco08g0951 08 9145686 9146670 CCT
Acco01g3541 01 52011521 52012361 Acco01g3541 01 52011521 52012361 ECH