LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3534	ATGGTGAGAACTCCAAGCTGTGACAAAAGTGGACTGAAGAAAGGAACGTGGACACCCGAGGAAGACAGGAAGCTGATTGCTTATGTTACCAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTATGCAGGCCTAGCAAGGTGTGGAAAGAGTTGCAGACTTCGATGGCTAAATTACCTGAGGCCCTACATCAAAAGAGGCAATTACACTCCTGAAGAAGAACAACTCATTATCCAACTGCACCACCAGCTGGGAAACAGATGGTCTGCGATTGCTGCAAAACTACCGGGGAGAACAGACAATGACATAAAGAACTACTGGCACACGAATCTCAAGAAGAAGATTCAAGACAAGTCGGGAAAACAGCAAGCCCAGGCAGAAGAGAAGGAATCATCAGGCGAAAAGGATCAAGTAAATAACAACACTAGCGCTGCTTGTGATGATAATAATCAGACGATGGGGGATTCGTCAAGCCGGCCGTCGCCCGATCAGTCATCGTCGAGTTTAGCCACCACAGGAGGCAGCCACGAATCAAGTTTGATAGTTGAAGATGATGATAATGATGAGTTTGCTTTTCTGAATGCATTGGCAGACGTAAATTTCTGGACAGATCCTTATGTGGCTGACATTTTCCCTGTCCCTACCCAAACAGCAGCCTCACTCCCACCCTTGTTAACTGATAATCAACCCGATTACTTTACCATGGATCCATCGTATGATGCACTGCTTTGGAATCCTCACAATCTTGTTTACGATCAATATTCTGGCTTATTCTCTTGA	783	0.4598	MVRTPSCDKSGLKKGTWTPEEDRKLIAYVTRYGCWNWRQLPKYAGLARCGKSCRLRWLNYLRPYIKRGNYTPEEEQLIIQLHHQLGNRWSAIAAKLPGRTDNDIKNYWHTNLKKKIQDKSGKQQAQAEEKESSGEKDQVNNNTSAACDDNNQTMGDSSSRPSPDQSSSSLATTGGSHESSLIVEDDDNDEFAFLNALADVNFWTDPYVADIFPVPTQTAASLPPLLTDNQPDYFTMDPSYDALLWNPHNLVYDQYSGLFS	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3534	260	CDD	SANT	69	112	IPR001005	-
	Acco01g3534	260	Gene3D	-	6	66	-	-
	Acco01g3534	260	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	180	-	-
	Acco01g3534	260	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Acco01g3534	260	MobiDBLite	consensus disorder prediction	115	181	-	-
	Acco01g3534	260	CDD	SANT	16	61	IPR001005	-
	Acco01g3534	260	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Acco01g3534	260	Gene3D	-	69	144	-	-
	Acco01g3534	260	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Acco01g3534	260	FunFam	MYB-related transcription factor	13	66	-	-
	Acco01g3534	260	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Acco01g3534	260	SMART	sant	66	114	IPR001005	-
	Acco01g3534	260	SMART	sant	13	63	IPR001005	-
	Acco01g3534	260	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Acco01g3534	260	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Acco01g3534	260	Coils	Coil	122	142	-	-
	Acco01g3534	260	MobiDBLite	consensus disorder prediction	137	179	-	-
	Acco01g3534	260	MobiDBLite	consensus disorder prediction	115	136	-	-
	Acco01g3534	260	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3534	Acco-ChrAcco01	51969721	51970757	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3534	1	210	MYB Transcription Factor Family	AT2G31180	49.524	7.90e-64	198

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Acco01g3534		Myb_DNA-binding	1e-13	CL0123