Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3532 ATGGTGAGAACGCCTTCGTATGACAAGAGTGGACTGAAAAAAGGGACGTGGACGCCCGAGGAAGATCGGAAGCTAATTGCTTATGTTACTAGGTATGGCTGCTGGAACTGGCGCCAACTCCCCCGGTTTGCAGGATTGGCGAGGTGTGGAAAGAGTTGTAGGCTGAGGTGGATGAATTATCTTAGACCCAACATCAAAAGAGGCAATTACACTCCCCAAGAAGAGGATCTCATCATTAAACTCCACAAAGAGATGGGCAATAGATGGTCGGCGATTGCGGCTCATTTGCCCGGAAGAACTGATAACGAGATAAAGAATCACTGGCACACCACCCTCAAGAAGCGATCTCAACACAAATCTTCCACCCAATCGCACCATAAATCTAAAAAGTCAAAAGATACTTCCACTTCCAAACCAAACAGTGCTTCTTCTTCTTCTTCTTCCCAGATCGAAATTTTGGATTCTGGCGCATTGTCTCCCCGGTCATATTCCTCCAGCTGCATAACCTCTTCGGCAAATTCAAGTCTGCAGGATGACTTGTCTTTTCTGGATGCTCTCGCAGTCACAGAGCCTGAGACCCAAAATTCATTTACCCACCAAAATTTGGATGACATGTTTTACGATGATCCAGCAGAAACAATAATGTCAGTGCACGCTCCTCTTCATCATCCCGCGGGTTCGGAGGATGCTTTTGCTTTCCTGGATTCACTTTCTCAGGCACCACTTGACACTTTTTTGATAGAGACACAAATGGCTGACGTGTCTTACCATCCCACACAGCCACAAGCCTCATTCGCCGATGAATTAGAATATCTCTATCCACTTTATGACATGGATCTCTGGAGTTAA 849 0.4605 MVRTPSYDKSGLKKGTWTPEEDRKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWMNYLRPNIKRGNYTPQEEDLIIKLHKEMGNRWSAIAAHLPGRTDNEIKNHWHTTLKKRSQHKSSTQSHHKSKKSKDTSTSKPNSASSSSSSQIEILDSGALSPRSYSSSCITSSANSSLQDDLSFLDALAVTEPETQNSFTHQNLDDMFYDDPAETIMSVHAPLHHPAGSEDAFAFLDSLSQAPLDTFLIETQMADVSYHPTQPQASFADELEYLYPLYDMDLWS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3532 282 Gene3D - 69 142 - -
Acco01g3532 282 CDD SANT 69 112 IPR001005 -
Acco01g3532 282 SMART sant 66 114 IPR001005 -
Acco01g3532 282 SMART sant 13 63 IPR001005 -
Acco01g3532 282 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco01g3532 282 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco01g3532 282 CDD SANT 16 61 IPR001005 -
Acco01g3532 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco01g3532 282 FunFam MYB-related transcription factor 13 66 - -
Acco01g3532 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco01g3532 282 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco01g3532 282 MobiDBLite consensus disorder prediction 112 151 - -
Acco01g3532 282 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 195 - -
Acco01g3532 282 Gene3D - 6 67 - -
Acco01g3532 282 MobiDBLite consensus disorder prediction 112 126 - -
Acco01g3532 282 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco01g3532 282 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Acco01g3532 282 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3532 Acco-ChrAcco01 51948721 51949769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3532 1 239 MYB Transcription Factor Family AT2G31180 43.750 2.44e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g3532 Myb_DNA-binding 1.7e-12 CL0123