Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3525 ATGGGAAGAGCACCTTGCTGTGACAAAAACGATCTCAAGAAGGGTCCATGGACCCCCGAGGAAGATCTAAAGCTCATCAACTACATTCAGATTCATGGACCCGGAAATTGGCGGACCCTCCCCAAGAATGCTGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTGAGACCCGATATCAAGAGAGGAAGATTCTCCTTTGAGGAAGAAGAGACCATCATTCAGTTGCACAGCATCATGGGAAACAAATGGTCGGCTATAGCAGCAAGATTACCAGGAAGAACGGACAATGAAATAAAGAACTACTGGAACACCCACATTAGGAAGAGATTCCTTCGAATGGGAATTGACCCGGTTACTCATGCCCCACGCCTCGACTTTCTAGAGATATCCTCCATTCTAAGGTCAATGCTGACCAACAACCAATCGCTTCTGAATCTGCCAAGTTTATTGGGGGCTCAAGCTTTGATGAACCCTCAACTGTTGAAGTTGGCCACCACTCTGATACCGCTCAAGAACCAGAACCCTGATTTGGTTTCACAGAATCTACAACAAATCCTTCTGGCCGCCAGGAATCATCAAGTAGACAGCCAAGCCTCCCCTTTCAGTCAGACGCCAACTCAGACTACCAATATGCATGAAGGTCTCTCAGGCAATATCACAAACACGAGCTGTTCATCAAGTTCGCAACAGAGTTCATCACTTGCTTCATATTTGTGTGAGGATCTCATTAATCCGCAACAAAACCAAGTTGATTTGCAAGGAATAAACACTTCATTCGGGCAGTGTCTAATGAGCAATGAAAATGTGCACAGTATGGGGTATGAGTCAGTTCTGTCGACGCCTTTGTCGAGCCCGACACCGTTCAATTCGCCGTCCACGTATGTGAGTAGCAGCGTGGAGGAGCAAAAGGATACCCATTTCTGCGACTTCTTCAAGTTCGAAATTCCTGAGAGTTTCGACATCAGTGACTTCTTGTAA 996 0.4649 MGRAPCCDKNDLKKGPWTPEEDLKLINYIQIHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRFLRMGIDPVTHAPRLDFLEISSILRSMLTNNQSLLNLPSLLGAQALMNPQLLKLATTLIPLKNQNPDLVSQNLQQILLAARNHQVDSQASPFSQTPTQTTNMHEGLSGNITNTSCSSSSQQSSSLASYLCEDLINPQQNQVDLQGINTSFGQCLMSNENVHSMGYESVLSTPLSSPTPFNSPSTYVSSSVEEQKDTHFCDFFKFEIPESFDISDFL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3525 331 CDD SANT 69 112 IPR001005 -
Acco01g3525 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco01g3525 331 CDD SANT 16 61 IPR001005 -
Acco01g3525 331 Gene3D - 13 66 - -
Acco01g3525 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 267 - -
Acco01g3525 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Acco01g3525 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco01g3525 331 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Acco01g3525 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco01g3525 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco01g3525 331 SMART sant 13 63 IPR001005 -
Acco01g3525 331 SMART sant 66 114 IPR001005 -
Acco01g3525 331 FunFam MYB-related transcription factor 13 66 - -
Acco01g3525 331 FunFam Transcription factor MYB39 69 130 - -
Acco01g3525 331 Gene3D - 69 115 - -
Acco01g3525 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3525 Acco-ChrAcco01 51901928 51903129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3525 1 226 MYB Transcription Factor Family AT4G21440 62.128 1.97e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g3525 Myb_DNA-binding 3e-15 CL0123