Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3486 ATGTTCATACTTGTCATATTTCCAGCATTCAAGCTATTGCACTGTGAAACAAAAAGAATGGCCTTAGATTTGCACTATGAGGATTCTGCATTACAAGTTGATGACTCTAGAGATAAATCTTGTTCTGAGGAGTGGAATTCTGCCCCTGAAGCCATTGCTGATTGTGATAGGGATTCTTCTGGTGACTTTCAATGCAATATTTGTCTGGATTTCTTGCATGATCCTGTATTAACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATCTACAAATGGTTCCATTATGGTAATGCTTCTTCTCGAAACACAGATCAGGAGAGGACATTATGCCCAGTATGCAATTCAGAAATCTCTCAATCATCTCTTGTTCCGGTATATGGACGTAGCCAAAGGACAACACCTTCCAAAGACAATCCTCACAATGAAGGGAGAGCCATACCTCCAAGACCTTGTGGACCTGTGTCAGTTCAAGACTTACCAAGATCATACAACAGCATAGCTGCAGCTCATGACTCTCGAAGATCATATGATACCATAGTTCCTTCCCAACCAGCTACTCAACAGTTCAATGTATTTAACTCAACACATGGAGTTTTTGGTCAGATGATATACGGGAGGATCTTTGGTAACCACCTGACAAACATGTATGCTTCTAATTCATATGGTCTCGCTGGGAACAACAATCCGAGGGTGAGAAGGTATCTGATGCCCGTGGATAAATCACTCAGCAGAATCTGTTTCTTCTTCTTCTGCTGCACAGTTTTGTGCCTTCTCTTGTTCTGA 783 0.4202 MFILVIFPAFKLLHCETKRMALDLHYEDSALQVDDSRDKSCSEEWNSAPEAIADCDRDSSGDFQCNICLDFLHDPVLTLCGHLYCWPCIYKWFHYGNASSRNTDQERTLCPVCNSEISQSSLVPVYGRSQRTTPSKDNPHNEGRAIPPRPCGPVSVQDLPRSYNSIAAAHDSRRSYDTIVPSQPATQQFNVFNSTHGVFGQMIYGRIFGNHLTNMYASNSYGLAGNNNPRVRRYLMPVDKSLSRICFFFFCCTVLCLLLF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3486 260 ProSiteProfiles Zinc finger RING-type profile. 65 114 IPR001841 -
Acco01g3486 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 35 257 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco01g3486 260 Pfam Zinc finger, C3HC4 type (RING finger) 65 113 IPR018957 GO:0046872
Acco01g3486 260 SUPERFAMILY RING/U-box 60 126 - -
Acco01g3486 260 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Acco01g3486 260 SMART ring_2 65 113 IPR001841 -
Acco01g3486 260 MobiDBLite consensus disorder prediction 127 151 - -
Acco01g3486 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3486 Acco-ChrAcco01 51628642 51629424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3486 58 260 C3H Transcription Factor Family AT4G28270 37.981 4.49e-43 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3486 01 51628642 51629424 Acco01g3486 01 51628642 51629424 ECH