Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3477 ATGGGCTGCATAAGCTCCAAGAGTTCAGCTGTGGAAGACAGCCGAGAAGGTTTGACGACTAAATTGTCATCATTGAGCAAAAGGTCATCGGAGCTGAATGTTTCACGGTTGAATTCATCAAAAGGGGACGAGGGAGTTTGGACCAAAAATGTGCTAGATGCCAGAGATGTTAAAGTTTCGTTGATTAGCAAGAAACCCAACGGTTCAGTGAAGTTTTATGGTGATCAAATTGGGGAGGAGAAAATTGAGAAACCCGAATATACCGTTCTTAATCATCCTGGTGTCGGTAAAGTGCCAAAGGCTGCAGAAGGAGAACAAGTTGCAGCAGGATGGCCAGCTTGGCTATCTTCTGTTGCTGGTGAAGCTATCAGGGGATGGGTACCTCGGAGTGCTAACACTTTCGAGAGGTTATATAAAATTGGCCAAGGAACATACAGTTCTGTTTATAAGGCACGCGATGTGACTCACCAAAAGACAGTTGCTTTGAAGAAAGTACGTTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCTTTGTTCTGCGTTGGCTTGACCATCCTAACGTGATAAAGTTAGAGGGCTTGATAACATCCCAGACATCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGGCTTGCTTCATGTCCTGGCGTTAAATTTTCAGAACCACAGATCAAGTGCTACATGCAGCAGCTTCTCAGTGGATTGGATCATTGTCACAGTCACGGTGTCCTCCATCGGGACATAAAGGGGTCAAATCTTCTCATTGACAATAATGGCATCCTAAAGATTGCAGATTTTGGTTTGGCAAGCTTTTTTGACCCCCATCACAGTGTTCCATTGACCAGCCGAGTGGTGACTCTTTGGTATAGGCCTCCAGAACTTTTACTTGGAGCATCTCATTACGGTGTTGCAGTGGATCTGTGGAGTGCTGGTTGTATACTGGGAGAACTATATTCTGGCAGGCCCATATTGCCTGGAAAAACTGAGGTTGAGCAATTGCATAGGATTTTTAAGCTTTGTGGCTCACCATCTGAAGATTACTGGCTTAAATTGCGGTGGCCACACTCAACAGTATTCAAGCCTCCACACCATTATAGACGTTGTATTGCCGAAACATTCCAGGAATATCCGCCTGCTGCTGTGAGGCTAATAGAGACCCTACTTTCCATAGATCCTGCACATCGAGGAACTGCAGCTGCTGCTTTGAAAAGTGAGTTCTTTACCATGGAACCCCTTGCTTGCGATCCTTCAAGTTTACCAAAATATCCTCCCAGCAAAGAGATTGATGCTAAGTTGCGAGATGAAGCAACCAGAAGGCAAAGAGCCGTTGGAGGGCAGGAGCAGAAAGTTAGCGTGGGAGTTAGACCAGAAAAAGGACTTCAGGCGCTTGCAGCAAGAAACAATGCTGACCCGCGCATGTCAATGCAGCAAGGACGTCATTCCAGCTCAAAGAGTCGAAGTGAATTGTTCAATCCTCCCAGAGAATCTGCTTCGGGATTGTTGGTTTTTCCCCATAAACAGTCGGACAATGTTAAGGAAATTGAGAACAATTTCTCTGGTCATCTGTACAAGAGGCCTTCACATTCAGGTCCATTGGTTCAGGGTCCTGGCTGGGTAAAGGTTGGGAAGGACATGGATGAGCAGCATCTTGGTTCCAACAGAGTCAATCTGTCAAAACTATCAAGTTTAGTTGCATCCAGGACTTCAATGTCTGAAGACCAGGAGGAAAAATCACATTCCTCACGGCCCAGGAAAACAGTTGATGTACGAAAATCTGTGGAATCAACTAGTGGATCAGAGTTAAGAAGAGGGCAGGCTCAAAAACACCAGTCTAAGCGAAATGATCTGTGTCACGTAGAACATGGAAGGACCCCACCTAAAGAATCAACTCCGGAAGGGTATGGCAGGGAAAACAAGATCTATCTTTCTGGTCCATTGATGTTATCGTCAAACAAGATGGATCAGATGCTCAAAGAACATGATCGAAAGATCCAGGAATATTCAAGACGAGCTAGAGTTGACAAGTCAAGAGGTGAAAAAGTTCGAGCCAAGCATAAGTAG 2094 0.4489 MGCISSKSSAVEDSREGLTTKLSSLSKRSSELNVSRLNSSKGDEGVWTKNVLDARDVKVSLISKKPNGSVKFYGDQIGEEKIEKPEYTVLNHPGVGKVPKAAEGEQVAAGWPAWLSSVAGEAIRGWVPRSANTFERLYKIGQGTYSSVYKARDVTHQKTVALKKVRFDNLDPESVKFMAREIFVLRWLDHPNVIKLEGLITSQTSRSLYLVFEYMEHDLTGLASCPGVKFSEPQIKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSAGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRWPHSTVFKPPHHYRRCIAETFQEYPPAAVRLIETLLSIDPAHRGTAAAALKSEFFTMEPLACDPSSLPKYPPSKEIDAKLRDEATRRQRAVGGQEQKVSVGVRPEKGLQALAARNNADPRMSMQQGRHSSSKSRSELFNPPRESASGLLVFPHKQSDNVKEIENNFSGHLYKRPSHSGPLVQGPGWVKVGKDMDEQHLGSNRVNLSKLSSLVASRTSMSEDQEEKSHSSRPRKTVDVRKSVESTSGSELRRGQAQKHQSKRNDLCHVEHGRTPPKESTPEGYGRENKIYLSGPLMLSSNKMDQMLKEHDRKIQEYSRRARVDKSRGEKVRAKHK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3477 697 MobiDBLite consensus disorder prediction 481 503 - -
Acco01g3477 697 MobiDBLite consensus disorder prediction 616 645 - -
Acco01g3477 697 CDD STKc_CDK9_like 134 418 - -
Acco01g3477 697 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Acco01g3477 697 MobiDBLite consensus disorder prediction 665 689 - -
Acco01g3477 697 MobiDBLite consensus disorder prediction 581 608 - -
Acco01g3477 697 Coils Coil 661 681 - -
Acco01g3477 697 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3477 697 MobiDBLite consensus disorder prediction 576 697 - -
Acco01g3477 697 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Acco01g3477 697 PANTHER CELL DIVISION PROTEIN KINASE 132 423 - -
Acco01g3477 697 Gene3D Transferase(Phosphotransferase) domain 1 222 457 - -
Acco01g3477 697 Gene3D Phosphorylase Kinase; domain 1 128 221 - -
Acco01g3477 697 SUPERFAMILY Protein kinase-like (PK-like) 127 421 IPR011009 -
Acco01g3477 697 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3477 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Acco01g3477 697 MobiDBLite consensus disorder prediction 1 22 - -
Acco01g3477 697 Pfam Protein kinase domain 135 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3477 697 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Acco01g3477 697 MobiDBLite consensus disorder prediction 476 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3477 Acco-ChrAcco01 51562907 51567417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3477 126 452 Core Cell Cycle Gene Families AT5G10270 49.714 7.24e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Acco01g3477 Pkinase 3.6e-66 CL0016