Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3471 ATGGATAATCTTCATCAGCAACGAGTTCAAGATCCTTCACAGACCAAGATCGAAAGAAGGCTCATAGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTACTCCAAACTCAATTCCCTTCTCCCAAACTTCAACCCTAAGCAAATGATTCCGCTGCCTGATCAGATAGACGAGGCCATAGACTATATAAAGAGTTTAGAGGCAAAGGTGAAGATGGTTCGGGAGAAGAAGGAGAGGTTAGTGCTGGGAAAGAAAAGGTCACATGCTTGTTGTAGCTCTAGTTCTTTTGAGACAGAGAGAAAGAGAAGCCAGATGAACTCACCACAAATTCAGATTCATGAAATGGGTTCGTCGCTAGAAGTAGTTCTGATTAATGGTTTGGATAATCAGTTCATTTTCCATGAGATTATTTGCATACTGCACCAAGAGAACGTGGAGGTCGTAAGTGCCAATTCCTCACTCGTCCGAGATTCCATGCTAAATGTTGTGCACGCACAGATTCAGCCATCTTTGCATGAATTCGGAGCTACCAAAGTAATCGAGAGATTGAAAAGGATTGTGTATGGATCTACCAGTGATGTACAAACAGTACAGCCAGCCGAGTTGCAAGATTACTTCCCAATTGGTACGGATGCATGGGACTTCTTTTAA 651 0.424 MDNLHQQRVQDPSQTKIERRLIEKNRRNQMKILYSKLNSLLPNFNPKQMIPLPDQIDEAIDYIKSLEAKVKMVREKKERLVLGKKRSHACCSSSSFETERKRSQMNSPQIQIHEMGSSLEVVLINGLDNQFIFHEIICILHQENVEVVSANSSLVRDSMLNVVHAQIQPSLHEFGATKVIERLKRIVYGSTSDVQTVQPAELQDYFPIGTDAWDFF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3471 216 FunFam Transcription factor bHLH162 8 92 - -
Acco01g3471 216 Gene3D - 5 93 IPR036638 GO:0046983
Acco01g3471 216 Pfam Helix-loop-helix DNA-binding domain 18 67 IPR011598 GO:0046983
Acco01g3471 216 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 187 - -
Acco01g3471 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Acco01g3471 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 84 IPR036638 GO:0046983
Acco01g3471 216 Coils Coil 56 76 - -
Acco01g3471 216 SMART finulus 20 72 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3471 Acco-ChrAcco01 51519961 51521049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3471 17 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.714 1.07e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g3471 HLH 4.2e-06 No_clan