Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3470 ATGGATCATCTTCATCGGCAACGAGTTCAAGATCCTTCACAGACCAAGATCGAAAGAAGGCTCATAGAGAAAAACAGAAGAAACCAGATGAAGATCCTTTACTCCAAACTCAATTCCCTTCTCCCAAACTTCAACCCTAAGCAAATGATTCCGCTGCCTGATCAGATAGACGAGGCCATAAACTATATAAAGAGTTTAGAGGCAAAGGTGAAGATGGTTCAGGAGAGGAAGGAGAGGTTAATGATGGGAAAGAAAAGGTCACATGCTTGTTGTAGCTCTAGTTCTTTTGAGACAGAGAGAAAGAGAAGCTTGATGAACTCACCACAAATTCAGATTCATGAAATGGGTTCGTCGCTAGAAGTAGTTCTGATTAATGGTTTGGATAATCAGTTCATTTTCCCTGAGATTATTTGCATACTGCACCAAGAGAACGTGGAGATCGTAAGTCTCAATTCCTCACTCGTCAGAGATTCCATTCTAAATGTTGTACACGCACAGATTCAGCCATCTTTGCATGAATTCGGAGCTACCAAAGTAATCGAGAGATTGAAAAGGTTTGGGTATGGATCTACCAGTGATGTAGAAACAGTACAGCCAGCCGAGTTAACGTTGCAAGATTACTTCCCAATTGGTACGGATGCATTGGACTTCTTTTGA 657 0.414 MDHLHRQRVQDPSQTKIERRLIEKNRRNQMKILYSKLNSLLPNFNPKQMIPLPDQIDEAINYIKSLEAKVKMVQERKERLMMGKKRSHACCSSSSFETERKRSLMNSPQIQIHEMGSSLEVVLINGLDNQFIFPEIICILHQENVEIVSLNSSLVRDSILNVVHAQIQPSLHEFGATKVIERLKRFGYGSTSDVETVQPAELTLQDYFPIGTDALDFF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3470 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 186 - -
Acco01g3470 218 Coils Coil 56 83 - -
Acco01g3470 218 Gene3D - 6 95 IPR036638 GO:0046983
Acco01g3470 218 SMART finulus 20 72 IPR011598 GO:0046983
Acco01g3470 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 85 IPR036638 GO:0046983
Acco01g3470 218 Pfam Helix-loop-helix DNA-binding domain 18 67 IPR011598 GO:0046983
Acco01g3470 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Acco01g3470 218 FunFam Transcription factor bHLH162 8 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3470 Acco-ChrAcco01 51502887 51503996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3470 17 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.782 4.14e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g3470 HLH 1.1e-05 No_clan