Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3465 ATGTCACTGCGCGCTTTCAAGGAGACTCTCAAGCCTTGCACAAGCCAACCGTCTTCTACATCGGTTAGCCAAAAGGAGTCTTCGATTCTCCGAGATTCCGACCTCATAATCCCTAGAAAACCCCCAAAGTCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCCCTTATTCAGCCGCACAATTCACCTAAGCGAGAAAGGGAACAGAAAAGTGTTGACGTCGTGGATGAGGAAGAAGAAGAGGAGGAGGAGGAGGAACCAGAATTGAAGAGGGCTAGATTCGGTGGAGCTAAATTGTGTCAGTTTCAGTACGATCATACTGGACCCTTTGAACCCCTGGTCTTGTCTTCGGATGGAGAAGTTCCAGTGGTACAGGTTCCTGCATCTATCAACTGCAGACTGCTTGAACATCAAAGAGCAGGAGTGAAGTTTCTGTATAGTTTGTATAAAAACAATCATGGAGGCATTCTTGGGGATGACATGGGTCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTTGGTAAAGATGGAGAATATATGTCAAAGGAAAACCAAGCAATGAAAAAAGATCCTGTGTTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAATGGGCAAACTTTAGAGTTTCCATTTATCATGGTTCTAACCGAGATCTAATATATGATAGATTGGAAGCACATGGAGTGGAGGTACTTATTACTAGTTTTGACACATACAGAATTCATGGTAGCATCTTGTCAGAAATCAAATGGGACATTGTGGTTATTGATGAGGCTCATCGGCTCAAGAATGAGAAATCAAAACTCTACAAAGCCTGTTTAGAAATAAAAACCCAAAGACGTTTTGGTCTTACTGGCACAATCATGCAAAATAAGATCATGGAACTGTTTAATCTCTTGGACTGGGTTGTTCCAGGATCCCTGGGAACACGTGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCATGGTCAGAGGTCAACTGCTCCAAAGAGGTTTGTTGAGATTGCCAATAAGCGGAAACAGCACCTTATGACAATTCTTCAGAAATATATGTTAAGAAGGATGAAGGAAGAGACCATTGGCCATCTTATGATGGGAAAGGAAGATAATGTTGTGTTTTGTGCCATGAGTGAATTACAAAAACGGGCATATAGGAGAATGTTACAACTTCCTGATATCCAATGCCTTATTAATAAGGATTTGCCTTGTAGTTGTGGAAGCCCACTCACACAAGTTGAATGTTGCAAGAGGATTGTACCAAACGGAATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTCCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTCGAGCTGATCAAGCCAAACCCCAAAGATGACCTGGACAAACAAAAAAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCTCTGATATTGATTTGGTGGGTGGGAACATGCAGATTGAGAGTTTTATGGGTCTAAGTGATGTGAAACATTGTGGAAAAATGAGAGCAATTGAAAAGCTTTTGTTTTCATGGATCTCTGAGGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTTGACATACTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTTCTCAAGACTTGATGGATCTACTCCAACAAATTTACGCCAGTCTCTGGTTGATGACTTCAACTCTAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGAGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCGAATCGTGTGGTGGTATTTGATCCCAACTGGAATCCCGCTCAAGACTTACAGGCACAGGACAGGTCATTCCGATTTGGGCAGAAGCGACATGTTGTGGTATTTCGGCTTCTTGCAGCTGGTTCACTGGAAGAGCTTGTTTATTCTCGTCAGGTCTACAAGCAGCAACTATCAAACATCGCTATCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGCGTCCAGGACTGCAAGGAATTTCAAGGGGAACTTTTTGGAATTTCCAATTTATTTCGAGATTTGTCTGACAAGCTTTTTACAAGTGAAATAATTCGTGTGCATGATAAGGAAGGAGAAGAACCTGGGCGTAGAATAGAACCGGGAGATGATATATTAGTATCAGAGTCTGGGAACAGGTTATCAACCAATTATAAGAGGACTTCAACTAGTGAAGCAGATCTGGAAGATCTCGGCATTGTTTATGCTCATCGGAATGAAGACATAGTCAACTTTGGTCCTGGCATTCAAGAGAAGACAGAGACCAGCATCTATCACAGTGAAAGCCAAGCCGTGCCCCTTGTCAAGAGAGAAGAACCAGAGCGTGTGGTTAAAAAACAGAGAGTTCCTATCATCAATGAGAGGAAGAGAGCCCAATATAGGCTGCTCGCTTGGTCTAGAGGCATGGGAGAGCTTGAATTTAGCATGTGGTTATTGTCAGCTACTCCAATGCAAAGAGAGGAAGTGCTTCAAGACTACAGGAGGAAGAAGATACCTTGA 2595 0.4274 MSLRAFKETLKPCTSQPSSTSVSQKESSILRDSDLIIPRKPPKSSLTQQLRRLQDPLAPPLIQPHNSPKREREQKSVDVVDEEEEEEEEEEPELKRARFGGAKLCQFQYDHTGPFEPLVLSSDGEVPVVQVPASINCRLLEHQRAGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYMSKENQAMKKDPVLIICPTSVIHNWESEFSKWANFRVSIYHGSNRDLIYDRLEAHGVEVLITSFDTYRIHGSILSEIKWDIVVIDEAHRLKNEKSKLYKACLEIKTQRRFGLTGTIMQNKIMELFNLLDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVEIANKRKQHLMTILQKYMLRRMKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDLDKQKKDAEFAAAVFGSDIDLVGGNMQIESFMGLSDVKHCGKMRAIEKLLFSWISEGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAISGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIRVHDKEGEEPGRRIEPGDDILVSESGNRLSTNYKRTSTSEADLEDLGIVYAHRNEDIVNFGPGIQEKTETSIYHSESQAVPLVKREEPERVVKKQRVPIINERKRAQYRLLAWSRGMGELEFSMWLLSATPMQREEVLQDYRRKKIP 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3465 864 SMART ultradead3 135 330 IPR014001 -
Acco01g3465 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 372 IPR027417 -
Acco01g3465 864 MobiDBLite consensus disorder prediction 9 30 - -
Acco01g3465 864 FunFam Switch 2 121 371 - -
Acco01g3465 864 PANTHER SNF2/RAD54 FAMILY MEMBER 16 810 - -
Acco01g3465 864 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
Acco01g3465 864 Pfam SNF2-related domain 154 412 IPR000330 GO:0005524|GO:0140658
Acco01g3465 864 SMART helicmild6 557 640 IPR001650 -
Acco01g3465 864 Gene3D - 118 371 IPR038718 -
Acco01g3465 864 Coils Coil 70 90 - -
Acco01g3465 864 CDD SF2_C_SNF 522 651 - -
Acco01g3465 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 695 IPR027417 -
Acco01g3465 864 Gene3D - 384 718 IPR027417 -
Acco01g3465 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 684 IPR001650 -
Acco01g3465 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 322 IPR014001 -
Acco01g3465 864 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3465 Acco-ChrAcco01 51467915 51474091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3465 529 676 RAD5 or RAD16-like Gene Family AT5G43530 37.838 2.78e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco01g3465 SNF2_N 7.6e-57 CL0023