LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3461	ATGCGGGTCGATACCCCGCGAAGTGAGAAACCAGTGAGGTGGCAGAAGATGGTTGGCTGTATGTTAATTATTTTTCAGATGGCCAATGGAGAAGTGAAACGTGCTGGAGTACGTTTGGGTTTGCAATGTCAGAGCGAGGATATGCCTGTCCTTACGACTTATGCTCAGCTTCACAAAACGCGGACACTTTCAATTTTCTGTTCCACAAGCACGATGACGATGATCGATAATCTTCTCATTTCCAGGGTCAACGAAGATGCTCAGGATCCTCTCTTGCCTTTTCTCCGGTCCATTAGGGAAGCTCTCGAAGATCCCATCTCCAGCCAAACTTCCAATTTGGCTCTCGTGACCCTTCTACAAGATTGCATCAGAAAGTTCAAGCACAATGTCCAGTACAGAAATGACATCAGATTTCTTAAGATTTGGCTCCTCTATATGGATGTCAGTAAGGATTATAATAACGTGTTCAAAGAAATGCTGGATAGTGATGTCTGTGCCGACCAGTCTTCACTTTATGTATGGTCTGCGTATTTTTTCGAATCCAAAGGGAGATTGCATGATGCTCACACGGTCTATAAGCTTGGCATCTCCAGGAATGCTGAACCAATTGAGTGGCTGAAGAAAGCGCATAAATTGTTCCTCAAAAGAATTTCTGAAATAGTGACTGCTGCTCCACGTCAGAAGATTGATGATAACGAATCCATGAAATCTGAAACTGGCGCCATTAATCCATGGAGCGCCTCAGTCATGGATGATCTGTTGAAGAGGATACATGCTTTGATCACAAAATTTGAATACAAAGACTTCTATTTTATACTTTATGCATTTCAGGGATATCATTCAAGTAACAAAGCTTACGCCGGAAAAGTTGCCTTATCTTCTTTGAAGAATTCATCAAGGAATAAAATTGTAGATATAGGTGGAAAGAAGTATCAAATCAAGGGTTGTGCCGGACAAGGTGGTTTTGCTCAAGTATACAAGGCATATGTTAATAGTAATCCCGATGAAGTTGTTGCACTGAAGATCCAAAAACCAGCATTCCCATGGGAATTTTACATCTATCGTCTGCTAGATCAACGTATCTTAGAGAGTGAAAGACCAAGCTTTGGCTTTGCTCATAGAATTCATATCCATTCTGACTGTAGCATACTCATCTGCGACTACTTAGCTCATGGGACATTACAGGATGTCATAAATTCATATTTGGTCCTGGGAAAATCCATGGAAGAAGTGATGTGCATTTACTATACTATAGAAATGCTACATATGCTTGAGACATTGCATGATGTTGGGATAATACATGGTGATTTCAAGCCAGATAACCTGCTTGTTCGCTATGCTAGGGGTGACCTTAAAGAAGATGAGTTTTTGAACAGAAGGGGTCCTTGGCGTGATCAGGGTCTTTGCCTTGTAGACTGGGGAAGAGGGATTGATCTACGTCTCTTTCCGGATCACACAGTATTTAATGGAGACTGCAGAACTTCTGGGTTTCGTTGCATCGAGATGCAAGAGACCAGGACATGGAAATTTCAGGTAGACGCATATGGCCTCTGTGTTGTTGTCCACATGATGTTGCATAACTCTTATATGGAGGTTGTCAAAAAAGAATCATCCGATGGGGGCTACGTCTATCTACCCAGACTGCCGTTTAAACGTTACTGGAACGTTGAGCTCTGGAAGACTTTCTTTACCAAGATGTTAAACCAATACCCTGGCAATGATGACGGAAGGTTGCTGCAGGAGTTGAGAAAGTCCTTCGAGGACTACATGGGCTCCAATCCGCAGCTTATAAAGAAGCTAAAGGAGTTACTCGTGAAGCAAAGGGCTTCCCTGTGCTCTGCTTAG	1845	0.426	MRVDTPRSEKPVRWQKMVGCMLIIFQMANGEVKRAGVRLGLQCQSEDMPVLTTYAQLHKTRTLSIFCSTSTMTMIDNLLISRVNEDAQDPLLPFLRSIREALEDPISSQTSNLALVTLLQDCIRKFKHNVQYRNDIRFLKIWLLYMDVSKDYNNVFKEMLDSDVCADQSSLYVWSAYFFESKGRLHDAHTVYKLGISRNAEPIEWLKKAHKLFLKRISEIVTAAPRQKIDDNESMKSETGAINPWSASVMDDLLKRIHALITKFEYKDFYFILYAFQGYHSSNKAYAGKVALSSLKNSSRNKIVDIGGKKYQIKGCAGQGGFAQVYKAYVNSNPDEVVALKIQKPAFPWEFYIYRLLDQRILESERPSFGFAHRIHIHSDCSILICDYLAHGTLQDVINSYLVLGKSMEEVMCIYYTIEMLHMLETLHDVGIIHGDFKPDNLLVRYARGDLKEDEFLNRRGPWRDQGLCLVDWGRGIDLRLFPDHTVFNGDCRTSGFRCIEMQETRTWKFQVDAYGLCVVVHMMLHNSYMEVVKKESSDGGYVYLPRLPFKRYWNVELWKTFFTKMLNQYPGNDDGRLLQELRKSFEDYMGSNPQLIKKLKELLVKQRASLCSA	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3461	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	432	444	IPR008271	GO:0004672\|GO:0006468
	Acco01g3461	614	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	232	608	IPR015661	GO:0007094
	Acco01g3461	614	SUPERFAMILY	Protein kinase-like (PK-like)	305	568	IPR011009	-
	Acco01g3461	614	FunFam	Mitotic checkpoint serine/threonine-protein kinase BUB1	309	611	-	-
	Acco01g3461	614	ProSiteProfiles	Protein kinase domain profile.	311	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3461	614	SMART	mad3_bub1_i	75	196	IPR013212	-
	Acco01g3461	614	SMART	serkin_6	311	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3461	614	ProSiteProfiles	BUB1 N-terminal domain profile.	79	237	IPR013212	-
	Acco01g3461	614	Pfam	Mad3/BUB1 homology region 1	84	196	IPR013212	-
	Acco01g3461	614	Gene3D	Transferase(Phosphotransferase) domain 1	308	612	-	-
	Acco01g3461	614	Gene3D	-	80	235	-	-
	Acco01g3461	614	Pfam	Protein kinase domain	313	527	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3461	Acco-ChrAcco01	51439015	51444632	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3461	309	456	CBL-interacting serine-threonine protein kinases	AT5G45820	29.114	1.82e-06	48.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Acco01g3461		Pkinase	9.6e-12	CL0016