Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3458 ATGAGCAGCGTCTGTGCTGATCAGCACAAGTTCCTTCCTTTCTCCCCTAAGAAATCTCTCCTCGACATCCCTCCCCGCAAGCTACTCTCTCGCCGCTCCGCCGCCATCCACGACCCCGACATGTTCCCTGACTCCCCCCGATTTTCCTCCTCCGACGAGGCCTTCCTTCACAAGTTTCTCCCCCGTAACAACCTCAACCTCGACTCTGATGACTATGACTCCGATCCCTATTCCTCCGACCACTTCCGAATGTACGAATTCAAGGTCCGTCGCTGCACCCGCAGCCGCAGCCACGACTGGACCGACTGCCCCTTCGCTCACCCGGGCGAGAAGGCTCGCCGCCGAGACCCCCGCCGCTTTCACTACTCCGGCACTGTCTGCCCCGAGTATCGGCGCGGCGGGTGCAGCCGTGGTGATAGCTGCGAGTTCGCTCACGGCGTCTTCGAGTGTTGGCTTCACCCTGCGAGGTACAGGACTGAGGCTTGTAAAGATGGGAAGAATTGTAAGCGAAAGGTGTGTTTCTTTGCTCACACACCTCGCCAGCTGAGAATTTTGCCTGTTAATTCTCATCCCCACGATTCTTCATCGTCGGTGGACAATCCCGCTTCTTGCAAGAATCATAACAAATTCTTGAACCCCGCTGGATCCAACAATTGCGGCTTGTTTTGTCATCAATGCGCTGCTGCTGGTGGGTCCACTTCATCCCCAACATCCACGCTGTTTGGGATGTCCCATATGTCACCGCCACTTTCACCGTCTTCGTCCCCTGTTTCACCGCCTCTTTCCCCTGTGAAACGCCGATCCACGGCGAACGGAGTCTCGCCAGTCTCTCGATATTGCAACAGACTTGCTGGATGCGAGACGTCCAGCAGGCTGATGAATAATCATGGGCTGGCTGGCTATAAAGATGCTCTCACTGAATTAATGAGCTCCTTGGAGGGTCTGAATTTCAATATTGAAGCTAACGCTTCGCCTGTTTCTGCCACAAAATCCCCAAATCTGCCATGGCTTGATATATCCATGATTAACTGTGAAGACCAGCATCAGCAGCAGCAGTTCATTCTTTCACCGGCCACTTCTTCTAGTTGTGAGGATCAGCACCAACAGATCATTCTTTCACCTTCTGCTCATACCGCAACAACATCTTCTGTTTCTTCAAGCTTCTCCAACAATGGGAAATTATATCCAAACATTGCGTTTCTCAGCAGTGAGAACAAGGTTGTTTCACACGACAACGGGTCCTCCTGCTCAGCCCCAGATCTCGCATGGGTCAACGAGCTGCTTATGTAG 1290 0.531 MSSVCADQHKFLPFSPKKSLLDIPPRKLLSRRSAAIHDPDMFPDSPRFSSSDEAFLHKFLPRNNLNLDSDDYDSDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSHPHDSSSSVDNPASCKNHNKFLNPAGSNNCGLFCHQCAAAGGSTSSPTSTLFGMSHMSPPLSPSSSPVSPPLSPVKRRSTANGVSPVSRYCNRLAGCETSSRLMNNHGLAGYKDALTELMSSLEGLNFNIEANASPVSATKSPNLPWLDISMINCEDQHQQQQFILSPATSSSCEDQHQQIILSPSAHTATTSSVSSSFSNNGKLYPNIAFLSSENKVVSHDNGSSCSAPDLAWVNELLM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3458 429 Gene3D - 121 184 - -
Acco01g3458 429 PANTHER UNKEMPT FAMILY MEMBER 32 428 IPR045234 -
Acco01g3458 429 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
Acco01g3458 429 MobiDBLite consensus disorder prediction 239 270 - -
Acco01g3458 429 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Acco01g3458 429 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Acco01g3458 429 FunFam Zinc finger CCCH domain-containing protein 66 79 147 - -
Acco01g3458 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 146 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3458 Acco-ChrAcco01 51418200 51419489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3458 73 183 C2H2 Transcription Factor Family AT5G07500 68.468 1.23e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco01g3458 zf-CCCH 1.2e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3458 01 51418200 51419489 Acco01g3458 01 51418200 51419489 ECH