Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3448 ATGACTCAGTGCAATGACTCTGAAAATAGTACTCACAGCAATACCATCGTGGAGAAGCGCAAAGACAGCTTAATTACAACATGCCCTTCCTGTGGACACCACATCAAATGCCACGAACAGGCTGGGATCCATGACTTGCCGGGACTGCCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTGGAACATTTGGAAGCCAAAGTTCGATCTGATATTCATAAGCTTCATCCACTTATTGATGAGTTCATTCCTACTCTTGAAGGCGAGAATGGAATCTGCTATACTCATCCTGAGAAGCTACCAGGAGTAAGCAAAGATGGTCTGGTGCGCCATTTCTTTCACAGGCCATCGAAGGCATACACGACAGGAACAAGGAAAAGGAGGAAGGTACACACTGATGACGTGGACGGGAGCGAGACACGCTGGCACAAGACAGGTAAGACGAGGCCAGTGTATCTGAGTGGGAAGCTCATAGGGTACAAGAAGATTCTGGTGCTCTACACTAACTATGGGAAGCAAAGAAAGCCCGAGAAGACAAACTGGGTAATGCACCAGTACCACCTCGGTTACAACGAAGAAGAGAAAGAAGGAGAGCTAGTGGTGTCCAAGGTTTTCTACCAAACACAGCCTAGGCAATGTGGTTCCTTGCTCATGAAAGATCAGTCACTTAATCCTGCAAAACTCACAACCCAGGCCATGTACGAGGCTGCCACTAATCATCATAAGGGCAATAATAATAATAATGGGTTTGTTGAGTTCTATGGTTCTTCTTTCTTGTCCTTCGATCAAGGCAACCAACAACACAACAGGTCTAGCAATAATGCTCAAGTGATCTCCCATTTTCCTGTCCAGGATGGTTCTTCTTTCAATATTCCTTGA 885 0.4565 MTQCNDSENSTHSNTIVEKRKDSLITTCPSCGHHIKCHEQAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHTDDVDGSETRWHKTGKTRPVYLSGKLIGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGYNEEEKEGELVVSKVFYQTQPRQCGSLLMKDQSLNPAKLTTQAMYEAATNHHKGNNNNNGFVEFYGSSFLSFDQGNQQHNRSSNNAQVISHFPVQDGSSFNIP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3448 294 Pfam No apical meristem (NAM) protein 50 190 IPR003441 GO:0003677|GO:0006355
Acco01g3448 294 ProSiteProfiles NAC domain profile. 49 209 IPR003441 GO:0003677|GO:0006355
Acco01g3448 294 FunFam NAC domain-containing protein 73 58 213 - -
Acco01g3448 294 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 14 267 IPR044799 GO:0003700
Acco01g3448 294 SUPERFAMILY NAC domain 43 209 IPR036093 GO:0003677|GO:0006355
Acco01g3448 294 Gene3D NAC domain 58 213 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3448 Acco-ChrAcco01 51341650 51343471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3448 1 216 NAC Transcription Factor Family AT4G28500 76.549 3.41e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g3448 NAM 1.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3448 01 51341650 51343471 Acco01g3448 01 51341650 51343471 ECH