Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3420 ATGGCAAGCAAGAACTCACTCCCATTTCTTCACCAAACTCCTCTCGATCACAAGCCTTTTGCCTATGTTTTTGCTTTGGAACTCACAGAGAGTAGCAAAATAATGGAAGGTTTTGATTGGAGTTCAGGCATTTGTGGAAATGCCTCAGAGAAAAGTGGTAGCCATGGTTTCACAGTTAATTCTGGTGTTATAGAAAATGGGTTTGCTTCATCTTCTTCTCTGGTTTTGGATAACCAGATAGGTGGGCTCGTGGAAGCTTCTGCCAAAGAACGAAACAAGGGCTTGTCCTTTGAGAGAAGCGTAGCTGCTTTGAAGAACCATAGCGAAGCAGAACGCAGGAGAAGAGCAAGGATCAATGCTCATCTTGATACACTTCGCACCGCAATTCCAGGAGCGAACAAGATGGACAAAGCATCGTTACTTGCAGAGGTGATCACACATCTGAAAGAGCTAAAAGGGAATGCAGCACAAGCTTGTGAAGGTTTAATGGTACCAAAGGACAGTGATGAGATAAGAGTTGAAGAACAAGAGGGTGGTTCTAATGGTTTTCCTTATTCAATAAGGGCATCTCTGTGTTGTGAGTATAAACCTGGGTTACTGTCTGACATTAGACAAGCAATTGAAGCTCTTCATATGATGATAATGAACGCAGAAATTGCGACCTTGGGCGGGAGGATGAAGAATGTGTTTGTGATAATAAGCTGCAAAGAGCACAACGACATTGAAGAAGATTCTGAATATAGGCAGTTTCTTGCTGGTTCTGTTCATCAAGCTCTCAAGTCAGTGGTTGATAGATTCTCTGCTTCACAGGACCTCTTAGGAATCAGAAAGAGGAGGAGGATTTCCGTGTTCAATTCATCATCTCTTGCAGAATTATGGTGA 882 0.4274 MASKNSLPFLHQTPLDHKPFAYVFALELTESSKIMEGFDWSSGICGNASEKSGSHGFTVNSGVIENGFASSSSLVLDNQIGGLVEASAKERNKGLSFERSVAALKNHSEAERRRRARINAHLDTLRTAIPGANKMDKASLLAEVITHLKELKGNAAQACEGLMVPKDSDEIRVEEQEGGSNGFPYSIRASLCCEYKPGLLSDIRQAIEALHMMIMNAEIATLGGRMKNVFVIISCKEHNDIEEDSEYRQFLAGSVHQALKSVVDRFSASQDLLGIRKRRRISVFNSSSLAELW 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3420 293 SMART finulus 108 157 IPR011598 GO:0046983
Acco01g3420 293 Pfam Helix-loop-helix DNA-binding domain 106 151 IPR011598 GO:0046983
Acco01g3420 293 Gene3D - 98 159 IPR036638 GO:0046983
Acco01g3420 293 PANTHER TRANSCRIPTION FACTOR BHLH30 70 286 IPR045847 GO:0003700|GO:0006355
Acco01g3420 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 153 IPR036638 GO:0046983
Acco01g3420 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 151 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3420 Acco-ChrAcco01 51159332 51160307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3420 99 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.117 1.29e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g3420 HLH 1.1e-10 No_clan