Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3414 ATGTCGCAATCTGGGAAGTCTGTGCGAGACCTGGGCTATGACTCTCTTACAACTCGATTCGGTGATTCGCTGACTTGTGAAGAGAACAAGCCCGATTTCAAAGAACTCGATCTGGGTTCGTTCATTTCGCCATTGAAAATCCGCAGCGCAGGTAATGCTGGCAGCGGTGGTGGAGCGGCTGCCACTTCGAGCTCGAGTTCGAGTTCCTCCGGCTCAGTCACTGGCAGAAGCAACGCCCCCAAGTTGCCCAGAAGACTTGACGGAAAACCAAACCACCATTCCGGCGAGCTCACGAGCTATTTCGATACCAGCCCGAATGCCTCAGAGAGCCTCCGATCCGCTTCGGCGACGAGCAATTCCAAGCCGGGTCATCGAAGATCGGTTTCGGCCGGAGCCCCGTTAATATACTCTGGCGGAAGTCATAGCAGCCCGGGCAGTAATAATTGCTCGAACACTGCAACTTCAGGGACCAATTTATTTCCAACTGGTAATATTTGTCCCTCCGGGAAGATCCTAAAATCGAGTATGGTGTCTCGAGCTCCCAATAGAACTGATGTGTTGGGTTCTGGAACGGCAAATTATGGCCATGGTAATATAATGCGTGGTGGCGCGAAATTGAGCAATCCCGGGCACGTCGTGGATGACAATGGGGCAGGAAATTCTCAGCTTGGTGGAGCATCGGGGGTCGTTAGACGAACAATGAGTGGTTCTGATCCAGAAGAGATGAAGAAGGCTGGGAATGAGTTGTATAGAAGCGGTAATTTTGTGGAGGCATTGTCATTTTACGATCGTGCTATTTCGATATTGCCTAATAATGCAGCCTACCGGAGTAACCGGGCAGCGGCGTTGACGGCGTTGGGGAGACTGGCCGAGGCAGCGAAGGAGTGCGAAGAGGCTGTGAAGTTGGAACCTAATTATACCCGGGCTCATCAAAGGCTGGCTTCTCTTTGCCTGCGCTTTGGACGTATCGAACTTGCCAAGCGCCACCTCTATCTCCCTGGGCAACATGTGGATCAATCTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATATAAACCAATGTGCAGAGGCGAGAAAGGTTGGTGATTGGAAGAATGCACTTGGGGAATCAAATGCAGCGATTGCAGTTGGAGCAGATTTCTCACCTGAGCTTGTTGCTTGTAAAGTGGAAGCTTATTTAAAACTCCATCAACTTGAGGATGCTGAGTCCAGTCTCTCAAACATTCCAAAGTTGGAAGGTTGTTCTTTATCCTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTGCACTTCGTCCATGCTCAGGTTCATATGGCCATGGGAAGATTTGAGAACGCGATAGCAGCAGCTGAGAAGGCTAGACTGTTAGATTACAGCAATGTAGAAATTGATAGAGTTCTAAATACTGTGAAAATGGTAGCAAGAGCTCGCTCAAAGGGCAACGATCTCTTTAGCTCTGGCAAATTTTCTGAAGCTTGTTCTGCTTATGGGGAAGGCCTCCAATATGACAGCTACAACTATGTTCTGTACTGTAATAGAGCTGTTTGTTGGTCAAAACTAGGACTATGGGAAAACTCTGTTGAGGACTGTAGCCAAGCTCTCAACATTCAACCAAATTACAACAAGGCCCTCTTTCGCAGGGCTGCATCAAATGCAAAGCTTGAAAGATGGGCTGAAGTTGTGAAAGATTATGAGACCTTGAAACAAGAACTCCCAGGAGACAATGAAGTTGTTGAATCCCTTCGTAAGGCTCAGTTAGCTTTAATAAAATCTCGGGGGGAGGACCATGCTGGAAAGCTTGAAGTTGAAGTTGGAGCTGTCTCTTCATTGGATGAATTTAAAGCTGCTATCGCTTCTGCTGGTATTTCAGTAGTTCATTTCAAAGAGTCGTCGGATGAACTATGCGGAGAAATATCCCCATTCATAAATATGCTGTGCGTCAGATACCCATCTGTTAAATTTATCAAGGTTGATGTGGAGGAGTGTTTAGCTATAGCAAGAGCTGAGAGCATAACAACTGTCCCAACGTTCAAAATTTATAAAAACGGAACAAAGGTGAAGGAGATGATTCGGCCAACGCATAAGTTGTTAGAGGAGTCAGTGAGAAGCTGTAGTTCGCTCTGA 2136 0.4724 MSQSGKSVRDLGYDSLTTRFGDSLTCEENKPDFKELDLGSFISPLKIRSAGNAGSGGGAAATSSSSSSSSGSVTGRSNAPKLPRRLDGKPNHHSGELTSYFDTSPNASESLRSASATSNSKPGHRRSVSAGAPLIYSGGSHSSPGSNNCSNTATSGTNLFPTGNICPSGKILKSSMVSRAPNRTDVLGSGTANYGHGNIMRGGAKLSNPGHVVDDNGAGNSQLGGASGVVRRTMSGSDPEEMKKAGNELYRSGNFVEALSFYDRAISILPNNAAYRSNRAAALTALGRLAEAAKECEEAVKLEPNYTRAHQRLASLCLRFGRIELAKRHLYLPGQHVDQSELQKLRLLEKHINQCAEARKVGDWKNALGESNAAIAVGADFSPELVACKVEAYLKLHQLEDAESSLSNIPKLEGCSLSCSQTKFFGMVGEAYVHFVHAQVHMAMGRFENAIAAAEKARLLDYSNVEIDRVLNTVKMVARARSKGNDLFSSGKFSEACSAYGEGLQYDSYNYVLYCNRAVCWSKLGLWENSVEDCSQALNIQPNYNKALFRRAASNAKLERWAEVVKDYETLKQELPGDNEVVESLRKAQLALIKSRGEDHAGKLEVEVGAVSSLDEFKAAIASAGISVVHFKESSDELCGEISPFINMLCVRYPSVKFIKVDVEECLAIARAESITTVPTFKIYKNGTKVKEMIRPTHKLLEESVRSCSSL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3414 711 Gene3D Tetratricopeptide repeat domain 237 596 IPR011990 GO:0005515
Acco01g3414 711 SUPERFAMILY TPR-like 240 329 IPR011990 GO:0005515
Acco01g3414 711 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 706 IPR044534 -
Acco01g3414 711 Pfam Tetratricopeptide repeat 278 306 IPR019734 GO:0005515
Acco01g3414 711 Pfam Tetratricopeptide repeat 433 457 IPR019734 GO:0005515
Acco01g3414 711 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Acco01g3414 711 MobiDBLite consensus disorder prediction 47 150 - -
Acco01g3414 711 SUPERFAMILY Thioredoxin-like 611 696 IPR036249 -
Acco01g3414 711 CDD TRX_family 615 702 - -
Acco01g3414 711 SMART tpr_5 477 510 IPR019734 GO:0005515
Acco01g3414 711 SMART tpr_5 273 306 IPR019734 GO:0005515
Acco01g3414 711 SMART tpr_5 239 272 IPR019734 GO:0005515
Acco01g3414 711 SMART tpr_5 511 544 IPR019734 GO:0005515
Acco01g3414 711 SMART tpr_5 545 578 IPR019734 GO:0005515
Acco01g3414 711 SMART tpr_5 431 464 IPR019734 GO:0005515
Acco01g3414 711 MobiDBLite consensus disorder prediction 96 125 - -
Acco01g3414 711 SUPERFAMILY TPR-like 476 589 IPR011990 GO:0005515
Acco01g3414 711 FunFam TPR repeat-containing thioredoxin TTL4 603 709 - -
Acco01g3414 711 Gene3D Glutaredoxin 597 708 - -
Acco01g3414 711 MobiDBLite consensus disorder prediction 56 77 - -
Acco01g3414 711 Pfam Thioredoxin 614 696 IPR013766 -
Acco01g3414 711 MobiDBLite consensus disorder prediction 217 242 - -
Acco01g3414 711 SUPERFAMILY TPR-like 349 470 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3414 Acco-ChrAcco01 51118047 51121128 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g1138 08 11683865 11687194 Acco01g3414 01 51118047 51121128 CCT
Acco01g3414 01 51118047 51121128 Acco01g3414 01 51118047 51121128 ECH