Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3408 ATGGACTCCCCGGTGGGAGCTCCGTCGCCCCCCTCCACTGCTCCGTCCCGGTCGTCGCCGTTTCCCGGACGGGAAGACTGCTGGAGTGAAGACGCCACCTTCACGCTCATCGATGCATGGGGTGAACGTCACCTTGAGCTTAATCGAGGAAACCTCCGTCAGAAGCACTGGCAAGAAGTCGCCGACGCCGTTAACGCCAATCATGGCCACGTCAAGAAAGCTCGCCGAACCGACGTCCAGTGCAAGAACCGCATCGACACTCTGAAGAAGAAGTACAAGATCGAGAAGAACAAGGTCATCGATTTCGACGGGAGCTACACTAGCCCTTGGCCCTTCTTCGACCGCCTTGACGCTCTCATCGGCGATGCGTTTCCCGTTAAGAGACTTCCGCCGGCGATCGATAGCAGCCGCCGTGGCTCCCATCCCATGAAGTCTCCGTCATGGGTAATGTCACAAGTGCCTGTCGGCCCCCGATCCGGCACTCAGAAACGGCCGGCGATGCCGGCGACGGCGCCGGCGAGTATGAAAGATTCGTCTTTCCGTCGGAACTTTTCGGCTTTTGCAGAGGCAGCTGCCGCAGCGGCCAAGGTAGGGGATGCAAATAGTGACGATTCGGATGAGTCAAGGTCAAGTAGTGCCACTGGGAGTAGAAAGAGAGGAAGAGAAAGAGAGAAAAAGAGGGAGAGCGACGAGGATTCAGAATTTGGGTGCAGAGAACTGGCACAAGCAATAGAGAGGTTCGGAGAGATATACGAGAGAGTAGAAGCGGCGAAGCAAAGGCAAATGGTGGAGTTAGAGAAACAGAGGATGCAATTTGCGAAGGATTTGGAGTACCAGAGGATGGAACTTTTCATGGAAATGCAGGTTCAGCTTCAAAAAATCAAGCGCGCCAAGCGATCTTCTCAGGCTGGTGAGTCTTGTCAATTTTTATGTTTATCATTTGAGCCATCACTGCAAATGCTACAGTGCTCATTTTCGCCCAACTCTTCTGATTTCATGTCACCATTGTGTCAGTTTGGACCACATTAA 1029 0.5345 MDSPVGAPSPPSTAPSRSSPFPGREDCWSEDATFTLIDAWGERHLELNRGNLRQKHWQEVADAVNANHGHVKKARRTDVQCKNRIDTLKKKYKIEKNKVIDFDGSYTSPWPFFDRLDALIGDAFPVKRLPPAIDSSRRGSHPMKSPSWVMSQVPVGPRSGTQKRPAMPATAPASMKDSSFRRNFSAFAEAAAAAAKVGDANSDDSDESRSSSATGSRKRGREREKKRESDEDSEFGCRELAQAIERFGEIYERVEAAKQRQMVELEKQRMQFAKDLEYQRMELFMEMQVQLQKIKRAKRSSQAGESCQFLCLSFEPSLQMLQCSFSPNSSDFMSPLCQFGPH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3408 342 MobiDBLite consensus disorder prediction 1 26 - -
Acco01g3408 342 Pfam Myb/SANT-like DNA-binding domain 25 119 IPR044822 -
Acco01g3408 342 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 299 IPR044823 -
Acco01g3408 342 SMART 118neu2 35 125 IPR006578 -
Acco01g3408 342 MobiDBLite consensus disorder prediction 130 177 - -
Acco01g3408 342 MobiDBLite consensus disorder prediction 1 17 - -
Acco01g3408 342 Coils Coil 251 271 - -
Acco01g3408 342 FunFam trihelix transcription factor ASIL2 28 94 - -
Acco01g3408 342 MobiDBLite consensus disorder prediction 196 234 - -
Acco01g3408 342 MobiDBLite consensus disorder prediction 140 158 - -
Acco01g3408 342 Gene3D - 28 94 - -
Acco01g3408 342 MobiDBLite consensus disorder prediction 200 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3408 Acco-ChrAcco01 51062622 51063650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3408 218 296 Trihelix Transcription Factor Family AT3G14180 45.570 1.15e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Acco01g3408 Myb_DNA-bind_4 5.4e-25 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3408 01 51062622 51063650 Acco01g3408 01 51062622 51063650 ECH