Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3380 ATGGGGAAGCAAAGCATGTTTCGATATGCAGATAAGGTGGACAAATTGTTGATGCTGTTTGGGACGTTAGGAAGTTTTGGAGATGGGATTCAAACTCCTCTAATGATGTTCATTCTTAGCAATGTGATAAATGCATATGGAGACCCAAATGCTGTTCTGACAATGCATGATGTAAATAAGTATGCTTTAAGGCTTTTCTATGCTGCAATTGGAGTTGGACTCTCAGCTTTTGTTGAAGGAATGTGTTGGGCAAGAACTGCAGAGAGACAGACTTCCAGAATGAGAACGGAGTACCTGAAATCAGTACTACGACAAGAAGTCGGTTTCTTTGATACTCAGGCAGCAGGTTCTTCAACAACTTACCAAGTTGTCTCCCTCATTACGGCTGATGCAAACTCAATTCAAGATGCTTTAAGTGAAAAGATACCAAACTTCCTGGCCAGCATGTCAACCTTTTTATGCTGCCACATCTTTGCACTTGTACTATCATGGAGGCTTACTTTGGCAGCCATACCACTCTCAGTCATGTTCATCGTCCCAGCACTTATATTTGGGAAGATCATGTTGGATCTAGCAATGAAAATGATCGAATCTTATGGAGTTGCTGGTGGGATTGCAGAACAAGCAATATCATCAATAAGAACTGTTTATTCATATGTGGGGGAGAATCAAACACTGAACAGATTCAGCAGTGCACTTGAGAAAACTATGGAATTGGGAATAAAGCAAGGTTTTGCAAAGGGGCTGATGTTAGGAAGCCTAGGAGTTATATATATCAGTTGGGGTTTTCAGGCTTGGGTTGGAACTTTTTTGATCACTGAGAAAGGAGAACAGGGTGGCCATGTATTTGTAGCCGGCTTCAATGTTCTCATGGGAGGCCTGAGTGTCTTAAGTGCACTTCCTCACTTGACTGCAATAACAGAGGCAACCGCCGCTGTCACCCGTCTGTTTGAAATGATTGATAGGGTGCCAACTATAGATTCTGAAGACAAAAAGGGAAAAGGTTTATCACATGTGAGAGGAGAAATTGAATTCCAAGGCATCTACTTTTGTTACCCATCTAGGCCAGATACAGCAGTCCTACAAGGACTCGACCTTAGGATTCCAGCAGGCAAGAGCATAGGTCTTGTGGGGGGTAGCGGTTCAGGCAAATCCACCATCATTGCATTGCTTGAGAGGTTTTATGACCCTGTTGAGGGAGAAATCCTCTTAGATGGCCATAAGATCAACAGACTTCAGTTAAAATGGTTGAGATCTCAACTTGGTCTAGTAAATCAAGAACCTGTTCTTTTTGCCACAACCATAAAATATAATATATTGTTTGGAAAAGAAGGGGCCTCCATGGACAGCGTGATAGCCGCAGCTAAAGCAGCAAATGCACACGATTTCATTGTCAAATTACCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGTTTTCAACTTTCTGGTGGGCAAAAGCAACGAATTGCCATAGCAAGAGCTTTACTTAGGGATCCAAAGGTTCTGCTGCTTGATGAAGCTACCAGTGCATTAGACGCACAATCAGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAAGGAAGGACTACAATCATTATTGCTCACCGTTTGACTACAATACAATCTGCACACACTATAGCAGTTCTTCAAGCAGGGAGAGTGATTGAATCAGGTACTCATAATGAGCTCATGCAAATGAATGATGGACAAGGTGGGGAATATGCAAGGATGGTGAAGTTGCAGCAAGTAACAACGAAGGATGAAGAATCCAGGAATTACAATCTCCAAACAGAGGGAAAAAATCTCCGCCATAAGACGAGCGTTGCACCAAGCCCGGCAAGTATCAGATCAAGCACACCAGGAACTCCAGTATTACTTCCATTTAATCAACCATTTTCCATGGGGACACCTTATTCCTACTCAGTTCAATATGATCCTGATGATGATAGTTATGAAGATAACTTCAAAAGATCAACTTATCCAGCTCCTTCTCAGTGGCGTTTGCTAAAGATGAATGCACCTGAGTGGGGAAGAGCATTGCTTGGATGCTTGGGTGCAGTAGGCTCAGGAGCTGTACAGCCAGTAAATGCATTTTTTGTGGGAACACTTATCTCTGTCTACTTTGACAGTGAAACCACAAAGATCAAGTCCAAAACTAGAGGTTTGGCTCTTATTTTCCTGGGAATTGGTGTTTTTAACTTCCTTACAAGTATTCTTCAACACCATAGTTTTGCTGTTATGGGAGAAAGACTGACTAAAAGGATACGAGAAAAACTACTGGGAAAATTGTTGACTTTTGAGATAGGCTGGTTTGATGATGCAGAGAACACAAGTGCGGCCATTTGTGCAAGATTAACCTCTGAAGCTAACATGGTCCGCTCCCTCGTTGGAGATCGCTTGTCATTATTGTCCCAAGCAATTTTTGGATCTCTCTTTGCCTATGCTCTTGCATTAGTGCTTACATGGAGGCTATCCCTTGTGATGATCGCTGTACAACCATTAGTAGTTGGGAGCTTCTATTCAAGAAGTGTCCTGATGAAGTCTATGGCAGAAAAAGCCCGAAAAGCTCAAAAGGAAGGAAGCCAACTAGCAAGTGAATCTGTAATAAACCATAGAACCATAACAGCCTTCAGTTCTCAGAAAAGAATGTTGGCCCTTTACAAATCCACGTTGGTAGGTCCCCAAAAGGAGAGCGTTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTTAGCTCACAATTCTTTAACACTGCAGCAACATCATTAGCTTACTGGTATGGAGGGAAGCTCTTGGTTGATGGGCTCATAGAACCAAAGCATCTTTTTCAAGCATTTTTCATCTTGCTCTTCACTGCATATGTCATTGCAGAAGCTGGAAGCATGACTTCTGACTTATCTAAAGGAAGCAATGCAGTTCGATCAGTATTTGAAATCTTGGACAGAAAAAGCGAGATTGATCCTGACAGCGCATGGGCAGTAGACATAAAGAAGAAATTAAGAGGTAGAGTTGAACTTAGAAGTGTTTTCTTTGCATATCCAACTAGACCAGAACAGATGATTTTCAAGGGTCTGTGTCTTAAAGTTGAGGCAGGCAGAACAGTGGCACTAGTGGGACAAAGTGGTTCTGGTAAATCAACTATTATTGGACTTATTGAAAGATTTTATGAACCATTGAAGGGGTCAATATGCATAGACGAACAAGACATAAAGTCCTACAACTTGAGAAAGCTAAGGTCACATATTGCCCTTGTAAGTCAGGAGCCAACCCTTTTTGCTGGAACCATTCGAGAAAACATTGCCTATGGGAAAGAAAAAGCTACTGAAGCTGAGATAAAAAAGGCTGCAACTCTGGCCAATGCTCATGAATTTATAAGTGGAATGAACGATGGGTATAACACATATTGTGGAGAAAGAGGGGTACAACTATCAGGAGGTCAAAAACAAAGGATAGCCTTAGCACGTGCAATATTGAAGAATCCTGCAATTTTATTGCTAGATGAGGCTACAAGTGCACTTGATAGTGTGTCAGAGAACTTGGTTCAAGAAGCACTAGAGAAGATGATGGTTGGCAGAACTTGCATAGTTGTGGCTCACAGACTATCTACCATACAGAAGTCAAACTCTATTGCTGTGATTAAGGATGGGAAAGTTGTGGAACAAGGTTCACATAATGAACTGATTTCTCTTGGACGAGATGGAGCATACTATTCTCTTGTTAAACTGCAAAATGGAAGATCTTTTTGA 3753 0.4173 MGKQSMFRYADKVDKLLMLFGTLGSFGDGIQTPLMMFILSNVINAYGDPNAVLTMHDVNKYALRLFYAAIGVGLSAFVEGMCWARTAERQTSRMRTEYLKSVLRQEVGFFDTQAAGSSTTYQVVSLITADANSIQDALSEKIPNFLASMSTFLCCHIFALVLSWRLTLAAIPLSVMFIVPALIFGKIMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALEKTMELGIKQGFAKGLMLGSLGVIYISWGFQAWVGTFLITEKGEQGGHVFVAGFNVLMGGLSVLSALPHLTAITEATAAVTRLFEMIDRVPTIDSEDKKGKGLSHVRGEIEFQGIYFCYPSRPDTAVLQGLDLRIPAGKSIGLVGGSGSGKSTIIALLERFYDPVEGEILLDGHKINRLQLKWLRSQLGLVNQEPVLFATTIKYNILFGKEGASMDSVIAAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLTTIQSAHTIAVLQAGRVIESGTHNELMQMNDGQGGEYARMVKLQQVTTKDEESRNYNLQTEGKNLRHKTSVAPSPASIRSSTPGTPVLLPFNQPFSMGTPYSYSVQYDPDDDSYEDNFKRSTYPAPSQWRLLKMNAPEWGRALLGCLGAVGSGAVQPVNAFFVGTLISVYFDSETTKIKSKTRGLALIFLGIGVFNFLTSILQHHSFAVMGERLTKRIREKLLGKLLTFEIGWFDDAENTSAAICARLTSEANMVRSLVGDRLSLLSQAIFGSLFAYALALVLTWRLSLVMIAVQPLVVGSFYSRSVLMKSMAEKARKAQKEGSQLASESVINHRTITAFSSQKRMLALYKSTLVGPQKESVRQSWISGFGLFSSQFFNTAATSLAYWYGGKLLVDGLIEPKHLFQAFFILLFTAYVIAEAGSMTSDLSKGSNAVRSVFEILDRKSEIDPDSAWAVDIKKKLRGRVELRSVFFAYPTRPEQMIFKGLCLKVEAGRTVALVGQSGSGKSTIIGLIERFYEPLKGSICIDEQDIKSYNLRKLRSHIALVSQEPTLFAGTIRENIAYGKEKATEAEIKKAATLANAHEFISGMNDGYNTYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHRLSTIQKSNSIAVIKDGKVVEQGSHNELISLGRDGAYYSLVKLQNGRSF 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3380 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 988 - -
Acco01g3380 1250 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524|GO:0016887
Acco01g3380 1250 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Acco01g3380 1250 PANTHER ABC TRANSPORTER B FAMILY 5 696 IPR039421 -
Acco01g3380 1250 Gene3D ABC transporter type 1, transmembrane domain 65 912 IPR036640 GO:0005524|GO:0016020
Acco01g3380 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1245 IPR027417 -
Acco01g3380 1250 Gene3D - 992 1249 IPR027417 -
Acco01g3380 1250 Pfam ABC transporter transmembrane region 684 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco01g3380 1250 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco01g3380 1250 SUPERFAMILY ABC transporter transmembrane region 6 327 IPR036640 GO:0005524|GO:0016020
Acco01g3380 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Acco01g3380 1250 FunFam ABC transporter B family member 15-like 6 341 - -
Acco01g3380 1250 FunFam ABC transporter B family member 4 996 1249 - -
Acco01g3380 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco01g3380 1250 MobiDBLite consensus disorder prediction 603 623 - -
Acco01g3380 1250 SUPERFAMILY ABC transporter transmembrane region 669 989 IPR036640 GO:0005524|GO:0016020
Acco01g3380 1250 CDD ABC_MTABC3_MDL1_MDL2 1006 1245 - -
Acco01g3380 1250 FunFam ABC transporter B family member 4 333 592 - -
Acco01g3380 1250 Gene3D - 341 597 IPR027417 -
Acco01g3380 1250 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Acco01g3380 1250 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Acco01g3380 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 584 IPR027417 -
Acco01g3380 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Acco01g3380 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Acco01g3380 1250 SMART AAA_5 370 562 IPR003593 GO:0016887
Acco01g3380 1250 SMART AAA_5 1033 1226 IPR003593 GO:0016887
Acco01g3380 1250 FunFam Putative ABC transporter B family member 8 646 993 - -
Acco01g3380 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco01g3380 1250 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3380 Acco-ChrAcco01 50872396 50877829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3380 4 1245 Calmodulin-binding Proteins AT2G36910 43.955 0.0 1012