Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3376 ATGGTTGGCCCGGAGGAAAATACCAATTGGCTTTTCGATTATGGTTTAATTGACGATATAACTGTCCCGGATGAGAGCTTTACTATACCTGCTTCCGGGTTCAGCTGGCCGGCGCAGGCCTTGAATGGTTCTTCCAATATCAGCGCTGAAATTGATGGCACGTTGGGGGATGCTCATGGTGTAAAAGAGTCTGGTTCAAAGAAGAGGGGTAGACTTGAATCATGTGCTGCTTCTAGTTCAAAGGCATGTCGGGAAAAGCTGAGGAGGGACAAGCTGAATGACAAGTTTCTTGAAATAGGCTCTATTTTGGAGCCTGGAAGGCCTTCCAAAACAGACAAAGCTGCTATTCTGGTTGACGCTGTTCGAATGGTGACACAATTACGGGGTGAAGCCGAGAAGTTGAAGGACTCAAACATGAATCTTCAAGAGAAGATTAAAGAGCTAAAGGCAGAGAAGAATGAACTACGAGATGAGAAACAGAGGCTCAAGGCTGAGAAAGAGAAGTTGGAGCAGCAGCTGAAAGCTATCAATGCCCAACCTAATTTCGTGCCTCCGCCTCCTGCAATCCCTGCTGCATTTGCTGCTCAAGGCCAAGCCCTTGGCAGCAAGTTGGTCCCTTTTATTGGTTATCCTCCTGGCGTTGCCATGTGGCAATTTATGCCTCCAGCTGCTGTGGATACTTCACAGGACCATGTGCTCCGTCCACCAGTTGCTTAA 717 0.4784 MVGPEENTNWLFDYGLIDDITVPDESFTIPASGFSWPAQALNGSSNISAEIDGTLGDAHGVKESGSKKRGRLESCAASSSKACREKLRRDKLNDKFLEIGSILEPGRPSKTDKAAILVDAVRMVTQLRGEAEKLKDSNMNLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKAINAQPNFVPPPPAIPAAFAAQGQALGSKLVPFIGYPPGVAMWQFMPPAAVDTSQDHVLRPPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3376 238 CDD bHLH_AtILR3_like 81 156 - -
Acco01g3376 238 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Acco01g3376 238 Coils Coil 124 179 - -
Acco01g3376 238 PANTHER BHLH TRANSCRIPTION FACTOR 4 238 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Acco01g3376 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 146 IPR036638 GO:0046983
Acco01g3376 238 Gene3D - 79 156 IPR036638 GO:0046983
Acco01g3376 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Acco01g3376 238 FunFam Transcription factor bHLH34 67 125 - -
Acco01g3376 238 SMART finulus 82 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3376 Acco-ChrAcco01 50836424 50838668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3376 1 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.614 4.12e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco01g3376 HLH 2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3376 01 50836424 50838668 Acco01g3376 01 50836424 50838668 ECH