LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3355	ATGGACTTTCACTTCCTCTCCCTCCATCAACCTCGGTGGCCAGATATAAGAGGACAAGGAAATGGTTGTGCCATGTGGTCTGGAGATCTAATTGACCTCAGACAGTTTTCTGTTGGGGGACAGGATCTGTATGTTCGGGTGGACGTTTCAGAACTAGGCTCACAAAGTGAGGAGGGTAGGAGGAAGATGACAATAGCAGTTGCTATCATCATACCCATTGTTTTTGGGATGATGTTATTTGGGATATGTTATATCAGAAATGTGAGAAGAAAAATGAATGAGAAACCAAAAACTACAGGAGCACAGAATAGTGAAGGACAGGAGGAAGATCTGGATCTCCCGTTGCTTGAGATGTCTGAAATATCTACGGCCACTGATAACTTCTCAATGAAAAAGAAGATTGGAGAAGGTGGCTTTGGATCTGTATACAGGGGAAGATTAGAAAATGAGCAAGAAATTGCTGTGAAAAGGCTTTCAAAAATTTCAGGACAAGGAGTAAATGAGTTCAAGAATGAAGTAAAACTTATTGCAAAACTTCAACATCGAAATCTTGTCAAATTAGTTGGATGCTGCATACAAGAGCAAGAGAGAATGCTAGTCTATGAATACATGCCTAATGGTAGCCTAGACTCCTTCATATTTGATAACAATAAAGGCAAAGTACTCAATTGGTCCAAGCGCTTTAGCATTATCTGTGGAATTGCTCGAGGGCTTCTATATCTTCATCAAGATTCTATATTAAGGATCATTCATAGGGATCTCAAGGCAAGCAACATTTTACTAGATAATTATTTGAATCCCAAAATATCAGATTTTGGATTGGCTAGAACTTTTGGAGGTGACCAGGTTGAAGGAAGCACAAACAGAGTAGTGGGAACTTATGGCTACATGTCACCAGAATATGCTGCTGATGGGTTATTTTCAATAAAATCTGACGTTTTTAGTTTTGGCATTTTAATGCTAGAGATAATAATTGGCAGAAGAAATAAAGGGTTTTATCATGCAGACAATACTAATAACCTTGTTGGTCATGTATGGACACAGTGGAAAGAAGGGAGGGTTCTAGAGCTCATTGACAAAAACATTGAGGTCTCGGGTAATGAACCAGAAGTATTACGCTGTATACATGTTGGTCTTTTGTGCGTTCAACATAATCCAGAAGATAGACCTACTATGTCGATGGTGGTTCTAATGTTAGGAAGCAATATAGAATTGACAGAGCCTAATCAACCTGGTTTTTATGAGAGGAAATTTTCAGTTGAAACAAATTCTTCTTCAACTCAGTTAGAATCTGTATCTACTAATGAAATAACAATTTCTCAATTAGAAGCTCGATAA	1338	0.3819	MDFHFLSLHQPRWPDIRGQGNGCAMWSGDLIDLRQFSVGGQDLYVRVDVSELGSQSEEGRRKMTIAVAIIIPIVFGMMLFGICYIRNVRRKMNEKPKTTGAQNSEGQEEDLDLPLLEMSEISTATDNFSMKKKIGEGGFGSVYRGRLENEQEIAVKRLSKISGQGVNEFKNEVKLIAKLQHRNLVKLVGCCIQEQERMLVYEYMPNGSLDSFIFDNNKGKVLNWSKRFSIICGIARGLLYLHQDSILRIIHRDLKASNILLDNYLNPKISDFGLARTFGGDQVEGSTNRVVGTYGYMSPEYAADGLFSIKSDVFSFGILMLEIIIGRRNKGFYHADNTNNLVGHVWTQWKEGRVLELIDKNIEVSGNEPEVLRCIHVGLLCVQHNPEDRPTMSMVVLMLGSNIELTEPNQPGFYERKFSVETNSSSTQLESVSTNEITISQLEAR	445

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3355	445	Pfam	Domain of unknown function (DUF3403)	403	445	IPR021820	GO:0004674
	Acco01g3355	445	ProSitePatterns	Protein kinases ATP-binding region signature.	134	156	IPR017441	GO:0005524
	Acco01g3355	445	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	91	203	-	-
	Acco01g3355	445	CDD	STKc_IRAK	134	399	-	-
	Acco01g3355	445	SMART	serkin_6	128	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3355	445	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	249	261	IPR008271	GO:0004672\|GO:0006468
	Acco01g3355	445	ProSiteProfiles	Protein kinase domain profile.	128	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3355	445	Pfam	Protein tyrosine and serine/threonine kinase	129	397	IPR001245	GO:0004672\|GO:0006468
	Acco01g3355	445	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	55	445	-	-
	Acco01g3355	445	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	204	407	-	-
	Acco01g3355	445	Gene3D	Transferase(Phosphotransferase) domain 1	204	412	-	-
	Acco01g3355	445	Gene3D	Phosphorylase Kinase; domain 1	87	203	-	-
	Acco01g3355	445	SUPERFAMILY	Protein kinase-like (PK-like)	113	418	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3355	Acco-ChrAcco01	50648738	50652372	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3355	65	413	Receptor kinase-like Gene Family	AT4G23230	53.125	8.27e-126	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco01g3355		PK_Tyr_Ser-Thr	2.8e-54	CL0016