Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3340 ATGAGAAGCAGACTAGTACCAGAAGGCTATCCACTACGTTTTGCATGGTCTCCTCAGACAAAGAGATGGGAAAATATCCAGTCCAGCCCGTCCGACCTGTGTGAAAGGTATGCTTTATGTGGTCCAAATACTAACTGCAGCTCTGGTGGGAGTTGCGACTGCTTGACAGGATTCAAAGCAAATTCGTCTGGTGGGTGTTCGCGAACAACTCAACTTGAATGTAGAGGGGGGGATAGGTTTGAAAAGTATGAGGGAATGAAATTACCAGACACGTCTTCTTCAAGGTACAATAAGACCATGAGCTTAGGGGAATGTGAAGAACTATGTCTGAAAAACTGCAGTTGCACAGCATATTCTAATTTGGATATTAGTCACGGAGGAAGTGGCTGCTTGCATTGGTTTGATAACATTATCGACTTGAGACAACTCGCAGAGGGAGGACAAGACTTTCATATACGAGTATATGCTGCTTCAGGCCCAGTGAAAAACGGCATGGGCAAGAGGAAGCTTGCAGGTATTGTGATCGGCTGCGCTTCATTAATCATGAGCATGGTAATAATCGGATTCACTATTAAGAAGAAGCTCATGCATCCACCAGGGAAAGCAATTTATTGGAAGGACAGGGGTGACAAAGAAGACGTTGATTTACCAATATTTGAATTTTCAACCATTTCCAATGCCACAGATCAATTTTCGGAGATGAATAAATTGGGACAAGGTGGTTTTGGAACAGTGTACAAGGGCATGTTAGTAGGCGGAAGAGAAATTGCAGTAAAGAGGCTTTCCAAAACATCAAGACAAGGAATGGATGAGTTTAAAAATGAAGTCTTGTTGATTGCAAAACTCCAACACCGCAATCTTGTAAAACTTCTTGGGTGTTCTATCCAACACGAAGAGAAGTTATTGATTTACGAATTCATGGCTAACGGAAGCCTAGACTACTTTATTTTTAATTCAACAAAAACTAAGCTACTAGATTGGGCTAAACGATTGCACATTATTGATGGGATTGCTAGAGGTCTTCTCTATCTTCATCAAGACTCAAGGTTGCGAATTATCCACAGGGATCTTAAAACCAGCAACATTCTTCTTGACATTGACATGAATCCAAAAATATCAGACTTTGGTTTAGCTAGAATTTTTGGTGGAGATCAGGCTGAGGCAAACACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCAGAATATGCAGTGCATGGATATTTTTCTGACAAATCTGATGTCTTTAGCTTTGGAGTAATGGTATTGGAGATAATCAGTGGGAAGAAAAATAGGGGATTTTGTGATCCACATCATCGTCTTAACCTCCTGGGACATGCATGGAAACTGTGGATTGAAAAAAGACCAATGGACCTAAGGGATGAACAACTGCAAGATTCAGTTACTTCATCTGAGCTGTTAAGATGTATTCAGGTGGGTCTATTGTGTGTGCAACAAAGACCAGAGGACAGACCTAGCATGTCGACCGTGGTTTTAATGCTGAATGGTGAAAAGTCACTTCCAAACCCGGGCGAGCCTGGGTTCTACATTGGAAGGGATAATCAAATCTTAGCAGATTCTATTGTAAGAAGTAGTGGAGAATGTTCAATTAATGAAGCTTCCAACTCAACACTTGAGCCAAGATAG 1650 0.4127 MRSRLVPEGYPLRFAWSPQTKRWENIQSSPSDLCERYALCGPNTNCSSGGSCDCLTGFKANSSGGCSRTTQLECRGGDRFEKYEGMKLPDTSSSRYNKTMSLGECEELCLKNCSCTAYSNLDISHGGSGCLHWFDNIIDLRQLAEGGQDFHIRVYAASGPVKNGMGKRKLAGIVIGCASLIMSMVIIGFTIKKKLMHPPGKAIYWKDRGDKEDVDLPIFEFSTISNATDQFSEMNKLGQGGFGTVYKGMLVGGREIAVKRLSKTSRQGMDEFKNEVLLIAKLQHRNLVKLLGCSIQHEEKLLIYEFMANGSLDYFIFNSTKTKLLDWAKRLHIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDIDMNPKISDFGLARIFGGDQAEANTNRVMGTYGYMPPEYAVHGYFSDKSDVFSFGVMVLEIISGKKNRGFCDPHHRLNLLGHAWKLWIEKRPMDLRDEQLQDSVTSSELLRCIQVGLLCVQQRPEDRPSMSTVVLMLNGEKSLPNPGEPGFYIGRDNQILADSIVRSSGECSINEASNSTLEPR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3340 549 Pfam S-locus glycoprotein domain 5 61 IPR000858 GO:0048544
Acco01g3340 549 ProSitePatterns Protein kinases ATP-binding region signature. 237 259 IPR017441 GO:0005524
Acco01g3340 549 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 201 306 - -
Acco01g3340 549 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 307 510 - -
Acco01g3340 549 ProSiteProfiles Protein kinase domain profile. 231 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3340 549 CDD STKc_IRAK 237 504 - -
Acco01g3340 549 ProSiteProfiles PAN/Apple domain profile. 74 155 IPR003609 -
Acco01g3340 549 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 41 530 - -
Acco01g3340 549 Gene3D Hepatocyte Growth Factor 70 157 - -
Acco01g3340 549 Pfam Protein tyrosine and serine/threonine kinase 234 500 IPR001245 GO:0004672|GO:0006468
Acco01g3340 549 SMART ntp_6 75 154 IPR003609 -
Acco01g3340 549 Gene3D Phosphorylase Kinase; domain 1 206 306 - -
Acco01g3340 549 SUPERFAMILY Protein kinase-like (PK-like) 216 502 IPR011009 -
Acco01g3340 549 Gene3D Transferase(Phosphotransferase) domain 1 307 509 - -
Acco01g3340 549 Pfam PAN-like domain 74 140 IPR003609 -
Acco01g3340 549 CDD PAN_AP_plant 70 154 - -
Acco01g3340 549 SMART serkin_6 231 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3340 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3340 Acco-ChrAcco01 50502041 50505020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3340 207 549 Receptor kinase-like Gene Family AT4G23150 54.598 2.85e-128 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco01g3340 PK_Tyr_Ser-Thr 1.7e-46 CL0016