Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3329 ATGATGACGAAGCCTTCTTCTAGTGATCATCAAAAGAATGGATTGAAGAAAGGTCCGTGGACTCCTGAAGAGGATCAGAAGCTCATCGATTATATTCATAAACATGGACACGGAAAATGGCGAACTCTTCCCAAGAATGCTGGACTTGCGAGATGTGGAAAGAGTTGCCGGCTACGCTGGACAAATTACTTAAGGCCAGATATTAAGAGAGGCAGATTCTCTTTCGAGGAAGAAGAAACCATCATACAGTTACATAGTGTTTTGGGAAACAAGTGGTCCACGATTGCTGCTAGCTTGCCGGGAAGAACAGATAATGAGATCAAGAATTATTGGAATACTCATATCAAGAAGAGGCTGTTGAAGATGGGGATTGATCCAGTGACTCACACTCCATGCTTGGATATTCAACAACTCTCCTCCATTCTCAACTCTTCACTCTACTCACCTCATGTTAACCATCCTCCTCATGACTTTGGAATGGGGAATAATAATATACTAAATCCAAGCCTCTTAAGCTTGCTCACAGCTTTCTTATCGTCTTCATCTCAAAACCCAGATGCTCCAAATCAAAATTACCACCACTTGAATAACTCTATCCAAACCTTCCCTCTTCAAGAAAACCAATCCGGTGCTGCTTCATTGCAGCCTTTACCTCTGGAATCACAACAGATTATCTATCCAGATACCACTAATTTTAGCTTCCAAAGTAGCCTGCCAAATGTGGGGCCGTATGAAGGAGGCCATAATTACTCTACCAGTCTTTTGGAGAATCATCAGATTGCACAAAACAACAGAAGCGATCCGAATTTCACTACTTTAGGGTCATTGATATCGTACTCGACGCCTTCATCATCTACTAGTCCGAACACTTTGAATTCGTCCGCATCTTCCACAGTGTTCGTCAAGGGTGCAACTGAAGAGGAAAGGGACACGTACTGCAGCAACATGTTGATGTCGTATAACATCTCAAACGCCTTGAATAATATGGATGGCTCTAATTGTCTCTTGTGA 1011 0.4243 MMTKPSSSDHQKNGLKKGPWTPEEDQKLIDYIHKHGHGKWRTLPKNAGLARCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSTIAASLPGRTDNEIKNYWNTHIKKRLLKMGIDPVTHTPCLDIQQLSSILNSSLYSPHVNHPPHDFGMGNNNILNPSLLSLLTAFLSSSSQNPDAPNQNYHHLNNSIQTFPLQENQSGAASLQPLPLESQQIIYPDTTNFSFQSSLPNVGPYEGGHNYSTSLLENHQIAQNNRSDPNFTTLGSLISYSTPSSSTSPNTLNSSASSTVFVKGATEEERDTYCSNMLMSYNISNALNNMDGSNCLL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3329 336 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Acco01g3329 336 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Acco01g3329 336 MobiDBLite consensus disorder prediction 1 22 - -
Acco01g3329 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Acco01g3329 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 263 - -
Acco01g3329 336 SMART sant 16 66 IPR001005 -
Acco01g3329 336 SMART sant 69 117 IPR001005 -
Acco01g3329 336 CDD SANT 72 115 IPR001005 -
Acco01g3329 336 FunFam MYB-related transcription factor 16 69 - -
Acco01g3329 336 CDD SANT 19 64 IPR001005 -
Acco01g3329 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Acco01g3329 336 Gene3D - 72 119 - -
Acco01g3329 336 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Acco01g3329 336 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Acco01g3329 336 Gene3D - 14 70 - -
Acco01g3329 336 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Acco01g3329 336 FunFam Transcription factor MYB39 72 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3329 Acco-ChrAcco01 50406876 50408269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3329 11 327 MYB Transcription Factor Family AT4G21440 47.126 7.42e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g3329 Myb_DNA-binding 1.2e-16 CL0123