Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3282 ATGAGGTCCCAAAGGCATCACCAGCGAAACTTTGTCCGGCCATCGTTTTCTCCGAACAATGCTGAACCCTCCCACTTCATGAAGATCGTACTTCCGGGAGCCATTCATGCCGAGAGCATGAGAATTCCAAAGGTGTTCGTGAGAAGATTTGAGAATGAACTGTGTGCTGGTGAGGCTACGATTGGTGTTCCAGATGGTCGTGTGTGGGAGATGGAACTTAAGAAATCTGAAAATGAAGTTTATTTCTGTAAGGGTTGGGAGGAATTTGTGAAATATTACTCTCTTCGATTTGGATTCTTTTTAGTCTTTAAATATGAAGGCAACTCACAGTTCAGTGTGGCGATCTTTGATTCGAGTGCTGCTGAGATCTATTATCCGCCCAAACTTAACTCTGAGAAGCAGAACTCGGCACCTAAATGTCGTGGAAAAAGGCCACACAGCTTTGATCAATCTTGCCATAACACAAGGAGCCAAAAGCAGAAGCTAGTGGAAGATGAAGAAGAAATAATTAACATAGAAGACGACGATGCCTTAAGCCATGGCAAATCAGGGAACAGGGATAGATCTGGGCAAGGCCATAGCTCCAAAATGGAGAAGATAACTTTGAGTAAAAACCGAAGCGCCCAGAATTTCAAACAGGGAGCAAATCGATCTTTTTCTGCAACAGTGAGGCCAAGTAATCTGAAGCGGCGGTGTTATATGGATGTGCCGAGTTCATTTTGGAAGGAGTATATGGGAAGAATGCTTCCTATGAAGTTGCAGGATTGCAAGGGACGAAAATGGGAGGTCAATTATTATAAACATTTGTCATCTGTCCGCATATGGAAGGGCTGGGTCGATTTTGCTAGGGCCAACAATGTGAAGGAAGGAGACACTTGTGTGTTTAAGCTTATCAAGAGGAACAACAGCTTTGTGTTTCAAGTTAGTATCATACTTCCCTGTTGA 945 0.4349 MRSQRHHQRNFVRPSFSPNNAEPSHFMKIVLPGAIHAESMRIPKVFVRRFENELCAGEATIGVPDGRVWEMELKKSENEVYFCKGWEEFVKYYSLRFGFFLVFKYEGNSQFSVAIFDSSAAEIYYPPKLNSEKQNSAPKCRGKRPHSFDQSCHNTRSQKQKLVEDEEEIINIEDDDALSHGKSGNRDRSGQGHSSKMEKITLSKNRSAQNFKQGANRSFSATVRPSNLKRRCYMDVPSSFWKEYMGRMLPMKLQDCKGRKWEVNYYKHLSSVRIWKGWVDFARANNVKEGDTCVFKLIKRNNSFVFQVSIILPC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3282 314 ProSiteProfiles B3 DNA-binding domain profile. 219 312 IPR003340 GO:0003677
Acco01g3282 314 Pfam B3 DNA binding domain 221 310 IPR003340 GO:0003677
Acco01g3282 314 Pfam B3 DNA binding domain 36 118 IPR003340 GO:0003677
Acco01g3282 314 MobiDBLite consensus disorder prediction 132 196 - -
Acco01g3282 314 SUPERFAMILY DNA-binding pseudobarrel domain 215 307 IPR015300 -
Acco01g3282 314 MobiDBLite consensus disorder prediction 174 194 - -
Acco01g3282 314 SMART B3_2 26 119 IPR003340 GO:0003677
Acco01g3282 314 SMART B3_2 219 310 IPR003340 GO:0003677
Acco01g3282 314 ProSiteProfiles B3 DNA-binding domain profile. 25 119 IPR003340 GO:0003677
Acco01g3282 314 CDD B3_DNA 25 117 IPR003340 GO:0003677
Acco01g3282 314 SUPERFAMILY DNA-binding pseudobarrel domain 22 119 IPR015300 -
Acco01g3282 314 CDD B3_DNA 217 308 IPR003340 GO:0003677
Acco01g3282 314 Gene3D - 18 120 IPR015300 -
Acco01g3282 314 Gene3D - 198 312 IPR015300 -
Acco01g3282 314 PANTHER B3 DOMAIN-CONTAINING 22 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3282 Acco-ChrAcco01 50036392 50037527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3282 26 309 B3 DNA Binding Superfamily AT3G18990 28.955 5.82e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco01g3282 B3 1.8e-16 CL0405